LOH segment inferring from WES data for germline sample

Hi all,

We applied WES to determine the pathogenic variants. Meanwhile, we want to check the LOH status of the sample.

We used CNVKit to calculate the CNV of the sample.

I am wondering is there a tool to get the LOH segment of the samples?

loh wes

• 1,551 views • link

written 6.2 years ago by J.F.Jiang

Plink or roh hunter :) https://github.com/imgag/ngs-bits/blob/master/doc/tools/RohHunter.md

• 0 views • link

written 6.2 years ago by German.M.Demidov

0 answers

No answers yet.

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