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0 replies
638 views
News: Online course - Environmental Metagenomics - 13-17 October
illumina mags nanopore metagenomics
written by Physalia-courses 281
0 votes
2 replies
779 views
Deg Difference in Deseq2
deg
updated by swbarnes2 1.5K • | written by j.k.owaresat 0
0 votes
0 replies
584 views
No gene_trans_map file in CD-HIT-EST output
cd-hit-est trinity rnaseq trinotate
updated by GenoMax 16K • | written by Olivia 0
0 votes
3 replies
1.2K views
MultiQC report - unique reads from sequence counts
fastqc unique reads multiqc
written by Rozita 4
0 votes
3 replies
1.0K views
NCBI Reference Genomes
genomes ncbi
updated by GenoMax 16K • | written by anna 7
0 votes
3 replies
1.5K views
Missing gem_classification.csv in Cell Ranger 9.0.0 Output Using cellranger multi with Combined Human-Mouse Reference
gem_classification 10x cellranger_multi combined_human-mouse_reference
updated by GenoMax 16K • | written by tlallihuacan 0
0 votes
1 reply
798 views
Statistical analysis in a metagenomics study to validate biological differences
metagenomics analysis
updated by chen 253 • | written by Chijioke 0
0 votes
2 replies
1.1K views
Assembly issues
adapters assembly spades
updated by chen 253 • | written by anna 0
0 votes
5 replies
1.6K views
Trouble removing adapters from sequences using cutadapt
removal cutadapt adapter primer
updated by chen 253 • | written by k.lagan 0
0 votes
5 replies
2.6K views
Fastp
fastp
updated by chen 253 • | written by nishimalhotra2612 5
0 votes
10 replies
2.1K views
Need help using ExpansionHunter
expansionhunter
written by brianhill_nc 0
0 votes
0 replies
762 views
Comparing and plotting multinomial elastic net performance
roc elasticnet plotting glmnet machinelearning
written by bioinfo 0
4 votes
3 replies
1.2K views
How to add gene lable on GSEA plot
gseaplot r
updated by yura.grabovska 94 • | written by Emy Alade 4
0 votes
0 replies
519 views
Adding New Samples to Existing VCF Files graphtyper2
graphtyper2 existing_vcf add_new_samples
written by upadhyay.maulik 0
0 votes
5 replies
1.3K views
Seurat dims and QC questions
dims
updated by 1769mkc 127 • | written by reddyornah 0
0 votes
1 reply
1.0K views
Duplication rate as reported by fastp.
fastp duplication rna-seq
updated by GenoMax 16K • | written by Anjan 85
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2 replies
1.4K views
Is it appropriate to include singleton reads with paired-end datasets for low-coverage Anaplasma marginale comparative genome analysis?
assembly analysis coverage genome singletons comparative
updated by Mensur Dlakic 3.0K • | written by ashiqullah024 0
0 votes
1 reply
1.3K views
ComBat for Multiple Batch Effects in Methylation Data (Chip, Row, Plate)
combat methylation epic batch-correction
updated by Basti 210 • | written by Eliveri 35
0 votes
1 reply
659 views
Using a Seurat object to create a cellchat object
cellchat
written by m.sharghi 0
0 votes
0 replies
643 views
WGCNA - High R2 and Mean connectivity at low soft power
wgcna
written by Leonard Barnabas 0
0 votes
0 replies
934 views
How do I combine or integrate my VDJ data for TCR and BCR with seurat object?
vdj screpertoire seurat
updated by GenoMax 16K • | written by Jaber 3
0 votes
4 replies
2.9K views
DGE analysis in Seurat using paired samples per donor ?
paired seurat dge sample
written by Picasa 71
1 vote
3 replies
1.6K views
RNA-seq: TPM batch effect correction
tpm combat rna-seq
updated by rfran010 174 • | written by Samuel 1
0 votes
3 replies
1.1K views
Error running pbrun fq2bam: No space left on device
disk space
updated by DBScan 53 • | written by Ritu 0
2 votes
3 replies
2.4K views
How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
annotation lncrna microarray probe
updated by GenoMax 16K • | written by daphneolivia39 2
0 votes
5 replies
1.2K views
Statistics for bins
data shotgun
updated by GenoMax 16K • | written by shevch2009 2
0 votes
4 replies
1.2K views
twist exome panel analysis
twist exome
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
1 reply
906 views
Run hifiasm without error correction module?
hifiasm assembly wgs nanopore genomics
updated by shelkmike 201 • | written by Mark 6
0 votes
1 reply
662 views
PhageTerm Galaxy
error phageterm genomics
updated by GenoMax 16K • | written by NIkita 0
0 votes
1 reply
649 views
Demultiplexing of snAtcSeq data using demuxlet gives an empty output
genotype demuxlet scatacseq demultiplexing
updated by GenoMax 16K • | written by Bioiris 1
0 votes
1 reply
810 views
PbJelly Resume
gap-filling pacbio pbjelly
updated by eileenbaptista 0 • | written by Lissa Cruz Saavedra 0
0 votes
0 replies
548 views
How do I figure out which chain a ligand is bound to using rcsb-api?
rcsb
updated by GenoMax 16K • | written by Priyal 1
1 vote
2 replies
957 views
Deseq2
pydeseq2 deseq2
updated by GenoMax 16K • | written by sk_24 2
0 votes
0 replies
1.0K views
News: In-Person NGS Epigenomics Workshop (November 3-5 in Munich, Germany)
chipseq bisulfiteseq atacseq workshop
written by ecSeq Bioinformatics 9
1 vote
0 replies
1.1K views
News: Announcing a New Journal – Bioinformatics Methods and Applications – Now Open for Submissions
bioinformatics
written by Wei 1
0 votes
1 reply
771 views
How to address conflicting circRNA expression results between public datasets and published studies? is it normal?
cicrna-geo
updated by rfran010 174 • | written by ParastooA 2
0 votes
6 replies
1.3K views
Help for Pooled Exome Sequencing SNP Analysis
gatk snp exome polymorphisms
written by alejandro.mejiam1 2
0 votes
0 replies
563 views
low variant sites similarity between linear reference and vg call path
call vg
updated by GenoMax 16K • | written by PolenP 1
0 votes
0 replies
799 views
KEGG pathways. How to plot the log2FC of genes collapsed into a "node"?
visualization deg kegg r pathway
written by txema.heredia 31
0 votes
5 replies
1.5K views
MACS3 Parameter adjustments
human libraries illumina callpeak macs3
written by María José 1
0 votes
1 reply
1.2K views
DeSeq2 how to change design matrix when samples are exclusive: error in “Model matrix not full rank” checkFullRank(full)
deseq2
updated by ATpoint 9.1K • | written by totoroGirl 0
0 votes
1 reply
772 views
Interactive UMAP scanpy
umap scanpy interactive
updated by antonioggsousa 344 • | written by npont 3
1 vote
5 replies
2.1K views
Can I use removeBatchEffect() before performing DEG analysis in bulk RNA-seq with limma-voom?
batchcorrection voom deganalysis limma bulkrna
updated by i.sudbery 2.3K • | written by Sumeet 2
1 vote
5 replies
1.3K views
Log2FC track Visualization in IGV
visualization igv rnaseq
written by SomeOne 33
0 votes
0 replies
851 views
News: online course: Sex Chromosome Evolution - 6–10 October 2025
sexchromosome evolution genomics
written by Physalia-courses 281
0 votes
0 replies
539 views
GSEA of sugarcane
gsea
written by Bushra Bibi 8
0 votes
6 replies
1.8K views
DESeq2 design for differential expression with 2 timepoints and 2 controls
transcriptomic feeding deseq2 rnaseq
updated by txema.heredia 31 • | written by Cristina 0
0 votes
12 replies
2.1K views
FeatureCount : Successfully assigned alignments is low
rnaseq featurecount
written by HarperReed 1
0 votes
2 replies
1.2K views
Difficulties in calling peaks for CUT&RUN (IgG control with high RPKM value)
cutrun calling igg peak
written by Basti 210
0 votes
3 replies
1.4K views
custom BED to UCSC genome browser
browser ucsc ucsc-genome-browser genome methylation bed
written by npont 3
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