This is a test version of Biostars. For the public version, visit https://www.biostars.org.
3 votes
2 replies
2.7K views
Database Of Structurally Derived Protein Features
uniprot database
updated by fileyfood • fileyfood • written by samesense • samesense
2 votes
3 replies
2.3K views
Protein structure and snps
gene snp
updated by fileyfood • fileyfood • written by H.Hasani H.Hasani
16 votes
7 replies
12K views
Modelling Effect Of Mutation On Protein Structure
protein protein mutation
updated by fileyfood • fileyfood • written by didymos didymos
1 vote
2 replies
1.5K views
Comparison of protein structures
protein
updated by fileyfood • fileyfood • written by lochanamp lochanamp
1 vote
3 replies
4.9K views
Tools to display mutations in a protein's structure
protein sequence
updated by fileyfood • fileyfood • written by sviatoslav.kendall sviatoslav.kendall
2 votes
12 replies
2.0K views
Different comparisons in RNASeq Analysis
degs rnaseq
updated by mbyvcm mbyvcm • written by SomeOne • SomeOne
0 votes
1 reply
781 views
Querying on non-canonical bacterial IDs
microbes protein accession
updated by Mensur Dlakic Mensur Dlakic • written by benjamin.kellman • benjamin.kellman
0 votes
5 replies
1.2K views
Distribution of assayed SNPs per sample
distribution plink missingness
updated by mbyvcm mbyvcm • written by am29 • am29
0 votes
0 replies
836 views
News: Learn Python for Biological Data Analysis – Online Course this September!
ngs python programming
written by Physalia-courses Physalia-courses
4 votes
0 replies
1.2K views
Tutorial: How to calculate partial correlation controlling cancer types
crispr biology correlation computational bioinformatics
written by Ming Tommy Tang Ming Tommy Tang
0 votes
1 reply
802 views
SAIGE-GENE error
r saige
updated by GenoMax GenoMax • written by smyiz • smyiz
0 votes
1 reply
1.9K views
IGV track display problem: interval rectangle from BED file appears above all tracks in white, overlapping each other
igv bed
written by mcsimenc • mcsimenc
0 votes
2 replies
811 views
Y-axis break in Volcano Plot
volcano_plot enhanced_volcano
updated by antonioggsousa antonioggsousa • written by rajdeepboral00 • rajdeepboral00
1 vote
1 reply
901 views
How to rank a gene list using correlation coefficient and p-values for GSEA/clusterProfiler?
clusterprofiler gsea correlation rank genelist
written by c-wes • c-wes
0 votes
4 replies
1.5K views
Nanopore data analysis
nanopore
updated by colindaven colindaven • written by sarahmanderni sarahmanderni
2 votes
2 replies
3.0K views
What is the difference between norm --multiallelics -any versus --atomize?
bcftools
updated by ashotmarg2004 • ashotmarg2004 • written by a615ebfb • a615ebfb
0 votes
1 reply
724 views
checking the sequences that share origin
sequencing
updated by GenoMax GenoMax • written by QX • QX
0 votes
0 replies
1.1K views
News: Assembling Genomes with Oxford Nanopore: A Hands-On Guide to Long-Read Sequencing
nanopore genomeassembly longreads
written by Physalia-courses Physalia-courses
0 votes
2 replies
850 views
Bambu on illumina short reads sequencing
bambu
updated by Rob Rob • written by Simone • Simone
0 votes
0 replies
520 views
Isoquant Major Exon Elongation
isoquant nanopore exon
written by aico • aico
0 votes
0 replies
647 views
bcftools run-roh error
roh bcftools
updated by GenoMax GenoMax • written by 715c719f • 715c719f
0 votes
0 replies
907 views
News: Workshop: Virtual Single-Cell Transcriptomics, June 24–26
transcriptomics workshop uconn
written by zsc25001 • zsc25001
0 votes
6 replies
1.2K views
How can I find KO IDs for ORF sequences from kofam_scan ?
kofam_scan
updated by Ram Ram • written by Nikesh • Nikesh
0 votes
0 replies
802 views
VEP all genes are skipped due to invalid types
variants gtf vep annotation
written by Titus Titus
0 votes
3 replies
1.6K views
Isoform analysis after quantification with Salmon/Star
star salmon isoform analysis
written by rajdeepboral00 • rajdeepboral00
0 votes
0 replies
963 views
Confidence in CIBERSORT (LM22) Deconvolution Output for Rare Cell Types — Best Practices?
lm22 deconvolution cibersort
written by Pumla • Pumla
0 votes
7 replies
1.8K views
Significant reads loss after fastp
fastp loss reads
updated by GenoMax GenoMax • written by SpliceAndScript • SpliceAndScript
0 votes
1 reply
614 views
Shinyapps Server Down?
shinyapps posit
updated by GenoMax GenoMax • written by Arup Ghosh Arup Ghosh
0 votes
2 replies
867 views
Data of microarray
microarray
written by Peter • Peter
0 votes
0 replies
1.6K views
How to run GSVA on scRNA-Seq analysis on multiple clusters and groups to compare per tumor sample?
gsva scrna-seq
written by Minh-Anh • Minh-Anh
2 votes
6 replies
2.6K views
Best Tool for Fast RNA-Seq Transcriptome Alignment to Extract Unmapped Reads
mapping rna-seq
updated by dsull dsull • written by aboll • aboll
0 votes
2 replies
1.6K views
Time scaled tree with IQTree giving off looking branch length
bacteria phylogeny time evolution scaled
written by SushiRoll • SushiRoll
1 vote
2 replies
924 views
Signature Matrix Modifications/Subclustering
signature matrix scrna-seq seurat cibersortx
written by MitchT • MitchT
0 votes
2 replies
849 views
Picard CollectRawWgsMetrics runs much slower on non-Apple chip machine
picard
updated by Michael Dondrup Michael Dondrup • written by adixon3 • adixon3
0 votes
0 replies
586 views
Reporting Imputed SNPs in GWAS
impute gwas
updated by Ram Ram • written by Aastha • Aastha
0 votes
0 replies
711 views
Does Beagle use the reference genome for both phasing AND imputing genotypes?
beagle genotypes phasing imputation
written by giulia.trauzzi • giulia.trauzzi
0 votes
0 replies
585 views
In GERPplusplus, odd gerpelem outputs
gerp evolutionary gerpcol substitution gerpelem rates rejected
written by Begonia_pavonina • Begonia_pavonina
1 vote
2 replies
1.2K views
required annotations for VQSR
vqsr vcf annotation
written by Mahdi&Christ • Mahdi&Christ
1 vote
4 replies
1.2K views
Identify transgene insert loci/copy number in nanopore De-novo assembly
ont nanopore transgene sequencing wgs
written by ctmfarland • ctmfarland
0 votes
9 replies
2.4K views
Heatmap for visualizing the differentially expressed genes in RNA-seq data
r deseq2 rna-seq differentially-expressed heatmap
written by KABILAN • KABILAN
0 votes
1 reply
872 views
single-cell differential expression of unbalanced cell number
seurat scrna-seq
updated by ATpoint ATpoint • written by Yingying • Yingying
0 votes
1 reply
1.3K views
Differential Expression tests for cell-type clusters from a single-cell RNAseq dataset with no biological replicates
cell-type deg de single-cell
updated by Yingying • Yingying • written by aa23871x • aa23871x
0 votes
10 replies
1.7K views
Annotation Issue using miRBASE gff
ngs mirna
updated by GenoMax GenoMax • written by anthony.santana.703.j • anthony.santana.703.j
0 votes
0 replies
716 views
News: Evo 2 webinar - 1 day left to register
ai.llm.biology.genomics
written by Claire Watson • Claire Watson
1 vote
6 replies
1.7K views
Error Scaffolding with RagTag
scaffold ragtag
updated by Michael Dondrup Michael Dondrup • written by Bipin • Bipin
4 votes
0 replies
648 views
Tool: biothings-mcp - MCP server to query genes, variants, chemicals, taxons
api biothings genes ai mcp
written by Anton • Anton
2 votes
0 replies
556 views
Tool: synergy-age-mcp - a database of synergistic and antagonistic genetic interactions in longevity
combination longevity mcp ageing
written by Anton • Anton
2 votes
0 replies
604 views
Tool: opengenes-mcp - MCP server on the database for longevity genes
genes databases bioinformatics longevity mcp
written by Anton • Anton
2 votes
0 replies
613 views
Tool: gget-mcp - a bioinformatics toolkit for genomics queries and analysis (based on gget lbrary)
bioinformatics libraries mcp ai
written by Anton • Anton
0 votes
2 replies
879 views
Best pairwise alignment for insertion and deletion-containing sequences
sequence python biopython pairwise alignment
written by rbpdee • rbpdee
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