Interactive UMAP scanpy
Hi Biostars Commu,
Is there a way to hover on the UMAP generated with scanpy and therefore visualize interactively the cells I am pointing at? For example, on my UMAP I have two developmental stages and I would like to easily retrieve the id of the cells at the extremities of the UMAP
Thanks!
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antonioggsousa
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npont •
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npont •
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I think you should be able to use
plotly(docs). The UMAP plot is just a scatter plot. I think it should be possible as well to convert between formats, frommatplotlibtoplotly(see this post on Stackoverflow).