Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
686 results • Page
1 of 14
Sort: Votes
Rank
Views
Votes
Replies
76
votes
72
replies
20k
views
19 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
david
25 days ago by
Kevin Blighe
88k
40
votes
10
replies
43k
views
8 follow
Batch effects : ComBat or removebatcheffects (limma package) ?
limma
sva
Combat
batch-effect
updated 21 days ago by
cwwong13
▴ 40 • written 6.8 years ago by
lessismore
★ 1.3k
38
votes
12
replies
31k
views
9 follow
How to systematically check if a bam file is truncated
Exomeseq
updated 3 days ago by
alanh
▴ 170 • written 7.1 years ago by
jonessara770
▴ 240
38
votes
24
replies
2.3k
views
10 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 20 days ago by
i.sudbery
19k • written 23 days ago by
noodle
▴ 580
29
votes
28
replies
35k
views
11 follow
Split Fastq Files Into Chunks Of 1M Reads
split
fastq
updated 18 days ago by
thomas.heigl.ibk
• 0 • written 12.8 years ago by
Bioscientist
★ 1.7k
25
votes
11
replies
3.8k
views
6 follow
Forum:
Site Use Guidelines
meta
biostars
Guidelines
updated 27 days ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
19
votes
11
replies
14k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 24 days ago by
cmdcolin
★ 3.8k • written 10.8 years ago by
J.F.Jiang
▴ 920
16
votes
12
replies
7.5k
views
10 follow
how to split multi-fasta file into single fasta file named by header
genome
perl
python3
bash
python
updated 17 days ago by
rsieber
▴ 10 • written 3.2 years ago by
Kumar
▴ 120
14
votes
2
replies
7.1k
views
Trouble with Pilon installation
polishing
pilon
installation
updated 26 days ago by
Lissa Cruz Saavedra
• 0 • written 7.3 years ago by
Rox
★ 1.4k
13
votes
14
replies
991
views
High Malat-1 expression in single cell data
single-cell
updated 12 days ago by
t.montserrat.ayuso
▴ 40 • written 21 days ago by
carolofharvest
▴ 40
13
votes
17
replies
6.1k
views
9 follow
Blastn, need help to increase speed
RNA-Seq
blastn
blast+
updated 21 hours ago by
m13113153781
• 0 • written 3.2 years ago by
chiachoong_leong93
▴ 20
11
votes
3
replies
368
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 12 days ago by
b.contreras.moreira
▴ 200 • written 13 days ago by
ijarne
• 0
10
votes
16
replies
17k
views
7 follow
How Can I Count Snps In My Final Vcf Files
SNP
updated 13 days ago by
Pierre Lindenbaum
161k • written 5.8 years ago by
mostafarafiepour
▴ 180
10
votes
14
replies
827
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 13 days ago by
GenoMax
142k • written 19 days ago by
nicole.kavanagh
• 0
10
votes
6
replies
10k
views
6 follow
CDS vs cDNA vs transcript for mapping RNA-Seq reads
Assembly
rna-seq
alignment
updated 24 days ago by
Antonio R. Franco
★ 5.1k • written 6.1 years ago by
williamsbrian5064
▴ 520
9
votes
23
replies
9.8k
views
Tool:
BioLabDonkey - new Mac program for molecular biologists
software
biolabdonkey
9 days ago by
vytarasov
▴ 180
9
votes
13
replies
4.8k
views
Custom Reference panel creation for data imputation from .vcf files
imputation
reference panel
updated 10 days ago by
analyst
▴ 50 • written 6.4 years ago by
David_emir
▴ 490
9
votes
7
replies
7.2k
views
Align paired and unpaired reads simultaneously using Bowtie2?
alignment
updated 9 days ago by
Ruqaiya
• 0 • written 5.7 years ago by
xiaozhongzhiping
▴ 20
8
votes
5
replies
6.6k
views
ISCN annotation for SV/CN VCF files
SV
written 8 months ago by
a.beggs
▴ 60
8
votes
16
replies
1.2k
views
How to convert plink files to Hapmap Format
GWAS
Plink
updated 24 days ago by
bk11
★ 2.5k • written 10 weeks ago by
Sofia
• 0
8
votes
8
replies
774
views
PCA plot (Suggestions Needed)
DESeq2
PCAplot
updated 25 days ago by
swbarnes2
14k • written 26 days ago by
Aaliya
▴ 10
7
votes
2
replies
335
views
Gene set enrichment analysis differences between 2020 and 2024
Gene-ontology
updated 27 days ago by
geneontologyhelp
▴ 400 • written 28 days ago by
catherine.teyssier
• 0
7
votes
1
reply
214
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 13 days ago by
dariober
14k • written 13 days ago by
nhaus
▴ 360
7
votes
6
replies
616
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
29 days ago by
analyst
▴ 50
7
votes
7
replies
6.0k
views
6 follow
How to know synonymous and non-synonymous SNPs from transcriptome sequencing
RNA-Seq
SNP
updated 25 days ago by
rohitsatyam102
▴ 870 • written 6.2 years ago by
smallfish
▴ 10
7
votes
14
replies
2.9k
views
6 follow
How to find tandem duplications pattern in a DNA sequence
Repeat
updated 17 hours ago by
micah
▴ 30 • written 3.1 years ago by
kumajis
• 0
7
votes
16
replies
984
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
21 days ago by
Ruqaiya
• 0
6
votes
6
replies
1.8k
views
agilent human all exon sureselct v7 bed file
exon
human
bed
v7
agilent
all
sureselect
updated 15 days ago by
MiladAD
▴ 10 • written 2.0 years ago by
soheil
• 0
6
votes
7
replies
411
views
Longest transcript variant per gene
transcript
longest
variant
orthofinder
8 days ago by
sansan_96
▴ 90
6
votes
4
replies
356
views
Details on salmon index
Salmon
updated 3 days ago by
Rob
6.6k • written 4 days ago by
Lorenzo
• 0
6
votes
2
replies
257
views
EdgeR - relationship between logFC and coefficients
differential-expression
r
edger
updated 10 days ago by
Gordon Smyth
★ 7.2k • written 10 days ago by
gBioStar5
▴ 10
6
votes
4
replies
13k
views
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic
paired-end
updated 9 days ago by
Ruqaiya
• 0 • written 6.5 years ago by
dllopezr
▴ 130
6
votes
5
replies
2.3k
views
Tophat multiple or unique mapping criteria
RNA-Seq
updated 8 days ago by
Ruqaiya
• 0 • written 6.7 years ago by
maple964
• 0
6
votes
4
replies
452
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
18 days ago by
Estevão
▴ 10
6
votes
5
replies
1.7k
views
How to calculate coverage of Nanopore long read data?
sequencing
coverage
5 days ago by
Arton
▴ 10
6
votes
3
replies
240
views
Interpretting IGV output
IGV
updated 28 days ago by
Carlo Yague
8.7k • written 28 days ago by
analyst
▴ 50
5
votes
5
replies
351
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
12 days ago by
Chris
▴ 280
5
votes
6
replies
615
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 20 days ago by
me
▴ 760 • written 21 days ago by
Mariana
▴ 40
5
votes
4
replies
734
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
26 days ago by
kirillkirilenko
▴ 40
5
votes
5
replies
681
views
Tutorial:
how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix
RNAseq
R
updated 17 days ago by
Mbofire
• 0 • written 25 days ago by
Ming Tommy Tang
★ 3.9k
5
votes
2
replies
449
views
Missing protein (VEGF-A) in String db
VGFA
stringdb
updated 24 days ago by
shalespringer
▴ 10 • written 3 months ago by
Phenylananin
▴ 20
5
votes
3
replies
324
views
6 follow
Integrate transcriptomic data and proteomics data.
OMICS
updated 20 days ago by
Lluís R.
★ 1.2k • written 20 days ago by
이민경[학생](대학원 융합의과학과)
• 0
5
votes
5
replies
365
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA
DADA2
metabarcoding
updated 18 days ago by
atharvakarkare14
▴ 40 • written 18 days ago by
Begonia_pavonina
▴ 150
5
votes
7
replies
532
views
RNA seq analysis
DESeq
RNA-seq
5 days ago by
Jacek
▴ 20
5
votes
2
replies
354
views
ChIP-seq datasets: input samples omitted?
ChIP-seq
Normalization
NGS
updated 21 days ago by
i.sudbery
19k • written 24 days ago by
vanbelj
▴ 40
4
votes
1
reply
214
views
Extracting only 4-fold degenerate sites from gene sequences/alignments?
alignments
6 days ago by
J.
▴ 40
4
votes
5
replies
467
views
Figures are disappeared from html report of SnpEff
HTML
SnpEff
21 days ago by
analyst
▴ 50
4
votes
5
replies
3.4k
views
How to compare compare two Sam files to check mapping
alignment
updated 12 days ago by
DavidStreid
▴ 90 • written 6.4 years ago by
madhu.9124
▴ 60
4
votes
1
reply
271
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 14 days ago by
zx8754
11k • written 16 days ago by
Jautis
▴ 560
4
votes
6
replies
3.9k
views
Taking the difference of two VCFs (or removing singletons)
genome
sequencing
singleton
SNP
filter
updated 20 days ago by
Andres
▴ 20 • written 9.7 years ago by
hermathena
▴ 40
686 results • Page
1 of 14
Recent Votes
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
A: Bcftools merge taking too much time and producing large file
Answer: Kraken2 database
A: Why gene expression data should be log2 transformed?
Answer: Filter Genome for Specific Sites
Answer: Filter Genome for Specific Sites
Recent Locations •
All
South Korea,
just now
Hungary,
2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
12 minutes ago
United States,
15 minutes ago
United States,
16 minutes ago
United States,
19 minutes ago
United States,
21 minutes ago
Recent Awards •
All
Scholar
to
GenoMax
142k
Popular Question
to
tothepoint
▴ 800
Popular Question
to
safeassli
▴ 10
Popular Question
to
curious
▴ 750
Popular Question
to
manaswwm
▴ 510
Popular Question
to
Raghad
• 0
Scholar
to
Pierre Lindenbaum
161k
Recent Replies
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
Dave Carlson
★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
Comment: Trimming tool
by
Ram
43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
Comment: Kraken2 Custom Database non-deterministic results
by
GenoMax
142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient?
by
Pedro
• 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
Traffic: 1690 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6