updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Eric Normandeau
11k
120
votes
31
replies
200k
views
17 follow
105
votes
31
replies
95k
views
18 follow
58
votes
30
replies
11k
views
13 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Khader Shameer
18k
18
votes
30
replies
10k
views
6 follow
updated 11 months ago by
Ram
44k
•
written 7.4 years ago by
Brian Bushnell
20k
31
votes
30
replies
15k
views
6 follow
updated 11 months ago by
Ram
44k
•
written 6.0 years ago by
Jennifer Pham
▴
450
50
votes
30
replies
12k
views
13 follow
updated 8 weeks ago by
Istvan Albert
100k
•
written 8.2 years ago by
Ram
44k
102
votes
30
replies
62k
views
25 follow
updated 7 months ago by
Ram
44k
•
written 14.2 years ago by
Biostar User
★
1.0k
124
votes
29
replies
7.4k
views
18 follow
updated 6 months ago by
Ram
44k
•
written 14.2 years ago by
Simon Cockell
7.4k
4
votes
29
replies
11k
views
6 follow
84
votes
29
replies
32k
views
20 follow
updated 10 months ago by
amziepickles
•
0
•
written 8.2 years ago by
Obi Griffith
20k
20
votes
29
replies
2.6k
views
6 follow
updated 7 months ago by
Pierre Lindenbaum
162k
•
written 7 months ago by
Axzd
▴
70
70
votes
29
replies
15k
views
13 follow
updated 10 weeks ago by
jkbonfield
★
1.2k
•
written 5.2 years ago by
finswimmer
16k
16
votes
29
replies
1.9k
views
updated 3 months ago by
Mensur Dlakic
★
27k
•
written 3 months ago by
anasjamshed
▴
120
39
votes
28
replies
11k
views
10 follow
3 months ago by
Jeremy Leipzig
22k
43
votes
28
replies
5.7k
views
13 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Eric Normandeau
11k
29
votes
28
replies
35k
views
11 follow
updated 24 days ago by
thomas.heigl.ibk
•
0
•
written 12.8 years ago by
Bioscientist
★
1.7k
197
votes
27
replies
35k
views
20 follow
Forum:
Bioinformatics Cartoon
updated 10 months ago by
Ram
44k
•
written 12.4 years ago by
Maxime Lamontagne
★
2.3k
82
votes
27
replies
21k
views
12 follow
27
votes
27
replies
10k
views
6 follow
73
votes
27
replies
28k
views
16 follow
updated 5 months ago by
snardeli
•
0
•
written 10.3 years ago by
Istvan Albert
100k
28
votes
27
replies
15k
views
9 follow
26
votes
27
replies
2.2k
views
10 follow
77
votes
26
replies
122k
views
15 follow
24
votes
26
replies
3.7k
views
updated 11 months ago by
Ram
44k
•
written 4.6 years ago by
German.M.Demidov
★
2.9k
38
votes
26
replies
19k
views
16 follow
written 8.3 years ago by
biostart
▴
370
96
votes
26
replies
31k
views
15 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Pierre Lindenbaum
162k
20
votes
26
replies
3.3k
views
updated 9 months ago by
Joe
21k
•
written 5.0 years ago by
Joel Wallenius
▴
210
47
votes
26
replies
4.2k
views
11 follow
Blog:
Evolution of Biostars
updated 9 months ago by
aldhairmedico
▴
70
•
written 5.3 years ago by
venu
7.1k
3
votes
26
replies
2.1k
views
6 follow
105
votes
26
replies
43k
views
23 follow
updated 8 months ago by
zx8754
11k
•
written 11.4 years ago by
henryvuong
▴
810
81
votes
26
replies
13k
views
17 follow
21
votes
26
replies
9.8k
views
11 follow
Tutorial:
Create de novo repeat library
7
votes
25
replies
11k
views
6 follow
updated 11 months ago by
Ram
44k
•
written 10.1 years ago by
mikhail.shugay
3.5k
69
votes
25
replies
7.1k
views
16 follow
updated 6 months ago by
Ram
44k
•
written 14.2 years ago by
Dave Gerrard
▴
190
36
votes
25
replies
33k
views
15 follow
51
votes
25
replies
6.9k
views
10 follow
18
votes
25
replies
15k
views
13 follow
updated 10 months ago by
Pierre Lindenbaum
162k
•
written 2.4 years ago by
ConvolutedGenome
▴
30
13
votes
25
replies
4.4k
views
7 follow
17
votes
25
replies
2.5k
views
60
votes
25
replies
6.0k
views
8 follow
updated 11 months ago by
Ram
44k
•
written 3.8 years ago by
telroyjatter
▴
230
68
votes
25
replies
16k
views
12 follow
updated 7 months ago by
GenoMax
142k
•
written 5.2 years ago by
Phil Ewels
★
1.4k
13
votes
25
replies
11k
views
9 follow
updated 11 months ago by
Ram
44k
•
written 10.8 years ago by
mikhail.shugay
3.5k
60
votes
25
replies
22k
views
17 follow
updated 7 months ago by
Ram
44k
•
written 14.3 years ago by
Giovanni M Dall'Olio
28k
6
votes
25
replies
39k
views
14 follow
updated 12 months ago by
13554221497
•
0
•
written 6.2 years ago by
ARich
▴
130
38
votes
25
replies
9.2k
views
13 follow
updated 8 months ago by
Ram
44k
•
written 8.1 years ago by
waqasnayab
▴
250
88
votes
24
replies
24k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 5 weeks ago by
Gordon
•
0
•
written 3.6 years ago by
Hamid Ghaedi
3.2k
65
votes
24
replies
17k
views
14 follow
updated 7 months ago by
Ram
44k
•
written 14.2 years ago by
Pierre Lindenbaum
162k
39
votes
24
replies
2.4k
views
10 follow
159
votes
24
replies
63k
views
19 follow
updated 11 months ago by
Ram
44k
•
written 11.2 years ago by
Nicolas Rosewick
11k
48
votes
24
replies
8.3k
views
14 follow
Recent Votes
Recent Locations •
All
France/Nantes/Institut du Thorax - INSERM UMR1087, just now
Spain, 1 minute ago
Italy, 1 minute ago
Hungary, 3 minutes ago
Macao, 3 minutes ago
Oviedo, 6 minutes ago
Marseille, 7 minutes ago
Recent Awards •
All
Popular Question to
User000
▴
700
Popular Question to
A_heath
▴
160
Popular Question to
najibveto
▴
110
Scholar to
Zeng Jingyu
▴
80
Popular Question to
tomas4482
▴
400
Popular Question to
vkkodali_ncbi
★
3.7k
Recent Replies
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Sara
▴
30
I used Seurat, and in Seurat, I have gene names (which some are with gene-symbols and some with ENSG ids). Then I did Pseudobulk.
how can …
Comment: How to decrease the motif score?
by
ATpoint
82k
So you scan the entire genome and got nothing significant? Is that the issue?
Comment: perl Error - needLargeMem Bigwig
by
b.contreras.moreira
▴
200
A quick search suggests the problem is your empty input file? See <https://biostar.galaxyproject.org/p/6794>
Comment: Invalid CIGAR after using bam clipOverlap
by
MboiTui
▴
20
ooh good pickup. Might not be the problem but definitely not helping. Will re-run with streamlined workflow and with double quotes and see …
Comment: Invalid CIGAR after using bam clipOverlap
by
Pierre Lindenbaum
162k
may be not the problem but why this ` RG:Z:H7J22DRX3.${lane}-1C23074F ` in the RG.
you're using single quotes with bwa-mem and it won't …
Comment: Invalid CIGAR after using bam clipOverlap
by
MboiTui
▴
20
Hello Pierre,
Thanks for your reply and insight.
with samtools view | grep using the erroneous CIGAR string I get:
A00152:841:H7J22D…
Comment: Invalid CIGAR after using bam clipOverlap
by
Pierre Lindenbaum
162k
please, show us the following output:
samtools view "${Ind1}_sorted_dup.bam" | grep -F "A00152:841:H7J22DRX3:2:1112:5267:11397"
Furth…
Comment: Failed to download data from EBI with ascp
by
孝中
•
0
Hi, have you found the solution to this problem?
Comment: samtools write-index
by
R.L.
•
0
Oh God, thank you so much for helping me in both platforms! I am gonna upgrade my samtools to stay tracked with you and your team! Thank yo…
Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
jared.andrews07
★
17k
Go back to your original counts matrix or input data and assign consistent IDs during its generation.
Answer: Facing problem with single cell rna seq annotation using singleR
by
jared.andrews07
★
17k
A few things.
>(1)What did i do wrong here?
SingleR will annotate each cell with whatever it's most similar to in the reference datas…
Comment: Harmony integration group.by.var parameter
by
jared.andrews07
★
17k
Couldn't tell you, I avoid Seurat like the plague.
Comment: What is the best practice of scRNA workflow for multiple patients and samples us
by
Picasa
▴
640
Same. did you get any solution ?
Comment: Setting a threshold on gene expression for subsetting (scRNA-seq)
by
LauferVA
4.2k
Generally, I cannot advise this in the abstract. The thing is, depending on the treatment group and so forth, there are some transcripts th…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
Ram
44k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Traffic: 2193 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6