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220
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When should I use R-MarkDown over R-Script ?
r rscript rmarkdown
updated 8 days ago by 82k • written 8 days ago by ▴ 160
0
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1
reply
442
views
mitch analysis report priority by standard deviation
mitch standard_deviation
updated 3 months ago by ★ 1.9k • written 17 months ago by ▴ 160
0
votes
1
reply
452
views
Can I perform ANOVA test on rlog data of RNA sequencing counts?
rlog ANOVA
updated 12 months ago by 3.6k • written 12 months ago by ▴ 160
0
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1
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1.0k
views
Comment: Comment: What is the difference between vst and rlog to perform PCA ?
12 months ago by Amr ▴ 160
4
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3
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1.0k
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What is the difference between vst and rlog to perform PCA ?
rlog PCA vsd
updated 12 months ago by 82k • written 12 months ago by ▴ 160
0
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0
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1.1k
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
12 months ago by Amr ▴ 160
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1
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1.1k
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
12 months ago by Amr ▴ 160
0
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1
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1.1k
views
Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
12 months ago by Amr ▴ 160
4
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6
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1.1k
views
t-test to check if the cancer samples are significantly different than the normal samples using R
t-test independent
12 months ago by Amr ▴ 160
0
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0
replies
1.7k
views
Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Amr ▴ 160
4
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6
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1.7k
views
What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's down and upregulated?
GSEA HALLMARK
15 months ago by Amr ▴ 160
0
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Amr ▴ 160
1
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0
replies
327
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How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
HALLMARK_UV_RESPONSE_UP GSEA
updated 15 months ago by 82k • written 15 months ago by ▴ 160
2
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1
reply
554
views
Why we check adjusted p-value not p-value to check whether we reject the null hypothesis or not in DESeq2?
p-value DESeq2
updated 16 months ago by 82k • written 16 months ago by ▴ 160
0
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0
replies
415
views
KEGG Pathway pathway in cancer
cancer KEGG
16 months ago by Amr ▴ 160
1
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2
replies
724
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Can I get the read length from the count data file in R? How?
read_length sequencing
updated 16 months ago by 11k • written 17 months ago by ▴ 160
0
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1
reply
911
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Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
17 months ago by Amr ▴ 160
0
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1
reply
911
views
Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
17 months ago by Amr ▴ 160
0
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1
reply
911
views
Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
17 months ago by Amr ▴ 160
0
votes
7
replies
911
views
How to filter genes inside a normalized count data file based on p-adjust value?
normalization p-value DESeq2
updated 17 months ago by 43k • written 17 months ago by ▴ 160
0
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1
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747
views
Comment: Comment: What is the difference between Frame shift ins mutation and In frame ins mutatio
17 months ago by Amr ▴ 160
0
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3
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747
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What is the difference between Frame shift ins mutation and In frame ins mutation?
mutation Frameshift DNA
updated 17 months ago by 43k • written 17 months ago by ▴ 160
0
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2
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1.5k
views
Comment: Comment: How to connect with MobaXterm?
17 months ago by Amr ▴ 160
5
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7
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1.5k
views
6 follow
How to connect with MobaXterm?
login mobaxterm ssh offtopic
updated 17 months ago by 43k • written 17 months ago by ▴ 160
0
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0
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1.5k
views
Comment: Comment: How to connect with MobaXterm?
17 months ago by Amr ▴ 160
9
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19
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4.7k
views
6 follow
Relative frequencies of the nucleotides in Fasta files
fasta
updated 15 months ago by ▴ 140 • written 3.1 years ago by ▴ 160
0
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0
replies
1.0k
views
Comment: Comment: How to plot the relative abundance of the most abundant genera?
18 months ago by Amr ▴ 160
0
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2
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1.0k
views
How to plot the relative abundance of the most abundant genera?
relative_abundance taxa.mean.plot mean_relative_abundance ggplot2 taxonomic R
18 months ago by Amr ▴ 160
0
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1
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847
views
Comment: Comment: How to clean taxonomy file for microbiome analysis in R?
18 months ago by Amr ▴ 160
0
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1
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847
views
Comment: Comment: How to clean taxonomy file for microbiome analysis in R?
18 months ago by Amr ▴ 160
3
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5
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847
views
How to clean taxonomy file for microbiome analysis in R?
taxonomy microbiome_analysis
18 months ago by Amr ▴ 160
0
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1
reply
776
views
Comment: Comment: How to visualize taxonomic data based on mean relative abundance?
18 months ago by Amr ▴ 160
0
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3
replies
776
views
How to visualize taxonomic data based on mean relative abundance?
relative_abundance taxa.mean.plot mean_relative_abundance ggplot2 taxonomic
updated 18 months ago by ▴ 910 • written 18 months ago by ▴ 160
0
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0
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341
views
How to plot the relative abundance of the most abundant genera ? to visualize the taxonomic composition?
relative_abundance barchart abundance mean taxonomic
18 months ago by Amr ▴ 160
0
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0
replies
701
views
Comment: Comment: How to custom colors in plot_ordination?
18 months ago by Amr ▴ 160
0
votes
2
replies
701
views
How to custom colors in plot_ordination?
PCoA plot_ordination beta_diversity
18 months ago by Amr ▴ 160
0
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1
reply
1.0k
views
How to change colors in boxplot in R?
ggplot2 box-plot
updated 18 months ago by 43k • written 18 months ago by ▴ 160
2
votes
5
replies
2.7k
views
How to make alpha diversity boxplot?
alpha_diversity taxa ASV box_plot shannon
updated 7 months ago by • 0 • written 18 months ago by ▴ 160
0
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1
reply
2.7k
views
Comment: Comment: How to make alpha diversity boxplot?
18 months ago by Amr ▴ 160
0
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0
replies
2.5k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
18 months ago by Amr ▴ 160
0
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1
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2.5k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
18 months ago by Amr ▴ 160
4
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7
replies
2.5k
views
Error input data must be numeric in R, how to solve it?
error_numeric ASV_file R
18 months ago by Amr ▴ 160
0
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0
replies
2.5k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
18 months ago by Amr ▴ 160
0
votes
0
replies
2.5k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
18 months ago by Amr ▴ 160
0
votes
3
replies
1.3k
views
How to plot all enrichment plots from GSEA in one single plot in python or R?
R python ES GSEA
updated 17 months ago by 43k • written 19 months ago by ▴ 160
0
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0
replies
2.8k
views
Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
18 months ago by Amr ▴ 160
4
votes
7
replies
2.8k
views
Why we use adjusted p-value not p-value in differential gene expression analysis ?
p-value adjusted-p-value DGE DESeq2
18 months ago by Amr ▴ 160
0
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0
replies
2.8k
views
Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
18 months ago by Amr ▴ 160
0
votes
1
reply
2.8k
views
Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
18 months ago by Amr ▴ 160
0
votes
2
replies
626
views
Is there a setting in GSEA software to filter counts less than 10 before go for GSEA analysis?
GSEA
updated 18 months ago by ▴ 100 • written 19 months ago by ▴ 160
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