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3
votes
8
replies
3.1k
views
how to batch download SARS-CoV-2 sequences data from NCBI?
sequence sequencing
updated 3.0 years ago by 142k • written 3.5 years ago by ▴ 40
0
votes
2
replies
659
views
How to understand this piece of data from COVID19 data portal?
sequence
updated 3.4 years ago by 142k • written 3.4 years ago by ▴ 40
0
votes
1
reply
712
views
is it possible to transfer an amino acid sequence back into a nucleotide sequence using either blastx or tblastn?
sequence sequencing
updated 3.4 years ago by 161k • written 3.4 years ago by ▴ 40
1
vote
2
replies
748
views
is the sequences data in GISAID updated ?
sequence
3.4 years ago by 2001linana ▴ 40
1
vote
2
replies
661
views
how to open / access a .mat file in matlab ?
sequence
updated 3.4 years ago by 142k • written 3.4 years ago by ▴ 40
4
votes
5
replies
3.0k
views
How to parse a .fasta file in python ?
sequence fasta python
updated 3.4 years ago by ★ 1.9k • written 3.4 years ago by ▴ 40
0
votes
0
replies
521
views
what is single-vertex fixation probability ?
sequencing
3.4 years ago by 2001linana ▴ 40
3
votes
10
replies
1.9k
views
what is the meaning of "consensus mutation"?
sequence sequencing
3.5 years ago by 2001linana ▴ 40
0
votes
1
reply
666
views
is this a typo in this article?
sequence sequencing
3.5 years ago by 2001linana ▴ 40
0
votes
2
replies
792
views
difference between genotyping and sequencing ?
sequencing sequence
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 40
0
votes
2
replies
708
views
each strain has its own SNP (single nucleotide polymorphism) mutations in which time frame?
sequencing sequence
3.5 years ago by 2001linana ▴ 40
7
votes
7
replies
3.1k
views
how to understand this "Jaccard distance" ?
sequencing sequence
updated 2.7 years ago by ★ 27k • written 3.5 years ago by ▴ 40
0
votes
5
replies
755
views
what is exactly "protein folding energy"?
sequence sequencing
3.5 years ago by 2001linana ▴ 40
0
votes
3
replies
729
views
How to understand single nucleotide polymorphism (SNP)?
sequencing sequence
updated 3.5 years ago by ★ 16k • written 3.5 years ago by ▴ 40
0
votes
0
replies
638
views
Is there any specific reason to consider comutation analysis, regarding sars2 mutations?
sequencing sequence
3.5 years ago by 2001linana ▴ 40
0
votes
0
replies
625
views
what is the meaning of "node dating"?
sequencing sequence
3.5 years ago by 2001linana ▴ 40
2
votes
1
reply
662
views
what is the meaning of "coronavirus being converged"?
sequence sequencing
updated 3.5 years ago by ★ 2.2k • written 3.5 years ago by ▴ 40
1
vote
1
reply
736
views
what are the possible research to do regarding sequences-based analysis of SARS-CoV-2?
sequencing sequence
3.5 years ago by 2001linana ▴ 40
0
votes
2
replies
572
views
is it possible that consensus sequence maybe not exist ?
sequencing sequence
updated 3.5 years ago by 15k • written 3.5 years ago by ▴ 40
1
vote
2
replies
691
views
how to download data from COVID-19 Data Portal
sequencing
updated 3.5 years ago by ▴ 290 • written 3.5 years ago by ▴ 40
0
votes
0
replies
619
views
what is downstream analyses on the inferred phylogenies ?
sequencing
3.5 years ago by 2001linana ▴ 40
0
votes
1
reply
655
views
how to understand taking a derivative in using MLE?
R
updated 3.5 years ago by ▴ 300 • written 3.5 years ago by ▴ 40
0
votes
1
reply
566
views
how to understand the MRCA of the sampled cells in this article?
RNA-Seq sequencing
3.5 years ago by 2001linana ▴ 40
2
votes
6
replies
856
views
how to select important / meaningful mutation sites of SARS-CoV-2 ?
RNA-Seq sequencing
updated 3.5 years ago by ▴ 20 • written 3.5 years ago by ▴ 40
1
vote
1
reply
1.5k
views
how to proceed with MCMC based MAP (maximum a posterior) and ML (maximum likelihood) estimates?
R
3.5 years ago by 2001linana ▴ 40
1
vote
3
replies
649
views
why infinite site assumption implies that convergent evolution not existing?
sequence sequencing
3.5 years ago by 2001linana ▴ 40
2
votes
13
replies
1.9k
views
where do you download SARS-CoV-2 sequences data ?
RNA-Seq sequencing sequence
updated 3.5 years ago by 27k • written 3.5 years ago by ▴ 40
1
vote
8
replies
3.0k
views
how to download data from gisaid ?
RNA-Seq sequence
updated 24 months ago by 27k • written 3.5 years ago by ▴ 40
1
vote
5
replies
858
views
recombination and low mutation rate can potentially confound phylogenetic signal?
sequence gene
3.5 years ago by 2001linana ▴ 40
0
votes
0
replies
503
views
what is "mutational barcoding" ?
RNA-Seq genome
3.5 years ago by 2001linana ▴ 40
0
votes
0
replies
560
views
possible bioinformatics research topics concerning SARS-CoV-2
RNA-Seq genome alignment Assembly
3.5 years ago by 2001linana ▴ 40
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