what are the possible research to do regarding sequences-based analysis of SARS-CoV-2?
I'd like to know more about the computational side. However, any aspects concerning SARS-CoV-2 sequences can be posted. Any comments are greatly appreciated.
sequencing
sequence
• 1,088 views
•
link
written
by
2001linana •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Get cleaved SARS-CoV-2 protein sequences (all major variants)?
written by ngarber •I have an algorithm for assessing the presence of a degenerate motif in lists of protein sequences, and I would like to run it on …
-
Forum: where to get the site mutation rate of SARS-CoV-2?
written by 2001linana •I'd like to do some research on the mutation rate (the changing exact number with respect to time, and geography locations) of SARS-CoV-2. Could you …
-
how to batch download SARS-CoV-2 sequences data from NCBI?
written by 2001linana •Hi, I was trying to download SARS-CoV-2 sequences data from NCBI following this link: https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=SARS-CoV-2,%20taxid:2697049 When I click the empty box, I can only get …
-
How to understand single nucleotide polymorphism (SNP)?
written by 2001linana •I was reading an article with title "characterizing sars cov 2 mutations in the united states" lately and got confused about SNP (single nucleotide polymorphism). …
-
what is the difference between "sampling" and "subsampling" ?
written by 2001linana •Hi. I hope this is not a naive question to ask. Any comments are greatly appreciated.
-
Selection of Sequences
written by pfee418 •Hi guys, I'm currently will be doing comparative genome analysis of human coronaviruses (including SARS-CoV-2, SARS-CoV and MERS-CoV). I will be including strains of each …
-
Selection of Multiple Sequence Alignment Tool
written by pfee418 •Hi guys, I'm currently will be doing comparative genome analysis of human coronaviruses (including SARS-CoV-2, SARS-CoV and MERS-CoV). Tentatively the number of sequences might be …
-
how to select important / meaningful mutation sites of SARS-CoV-2 ?
written by 2001linana •I'd like to do a research concerning SARS-CoV-2 mutations. I was wondering, how to select important / meaningful mutations or do I need to analyse …
-
possible bioinformatics research topics concerning SARS-CoV-2
written by 2001linana •I am a researcher on SARS-CoV-2. The more I work on it, the more I find it interesting. Yet, interesting does not mean feasible, doable, …
-
If I've identified the gene via BLAST, can I translate it to protein and assume its correct?
written by christinejgu •Hi, I am trying to identify the S1/S2 (furin-like) cleavage site of SARS-CoV-2. I performed a local blast using my fasta file with whole genomes …
If this is for learning, I would follow the work already done by the experts in the field of virology, who have already published in journals like Science on these sequences.