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0
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Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN scRNA-seq
20 months ago by shangguandong1996 ▴ 30
13
votes
9
replies
1.7k
views
what's the disadvantage of removing cell-cylcle gene compared with regressing out
scRNA-seq
updated 3 months ago by ▴ 210 • written 21 months ago by ▴ 30
0
votes
1
reply
453
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multiple Sequence Alignment tools for cis-element
MSA cis-element
updated 23 months ago by 15k • written 23 months ago by ▴ 30
1
vote
4
replies
909
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how to link hmmalign result and FastTree or other Tree tools
FastTree hmmalign Phylogenetic_tree
24 months ago by shangguandong1996 ▴ 30
0
votes
0
replies
428
views
How can I build archetypal consensus motifs to represent different cluster motifs
motif
2.4 years ago by shangguandong1996 ▴ 30
5
votes
3
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1.6k
views
Is there any software that can use ATAC-seq to identify super enhancer
ATAC-seq enhancer super
updated 2.7 years ago by ★ 17k • written 2.7 years ago by ▴ 30
0
votes
0
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493
views
What's the biology meaning of multi-peak in a region
peak ATAC
2.8 years ago by shangguandong1996 ▴ 30
5
votes
12
replies
4.2k
views
weird MAplot or volcano plot of DESeq2 diff result
RNA-seq DESeq2
2.8 years ago by shangguandong1996 ▴ 30
2
votes
5
replies
1.1k
views
Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
ATAC
updated 2.9 years ago by ★ 1.2k • written 2.9 years ago by ▴ 30
0
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0
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1.0k
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how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
3.1 years ago by shangguandong1996 ▴ 30
3
votes
4
replies
1.3k
views
how to extract REF and ALT DNA string around SNV
SNV motif
3.1 years ago by shangguandong1996 ▴ 30
12
votes
15
replies
1.8k
views
6 follow
Is there other IDE like R studio working on the linux?
bioconductor Rstudio R
updated 14 months ago by 44k • written 3.3 years ago by ▴ 30
0
votes
1
reply
566
views
how to make BBmerge produce same strand fastq file
BBmerge
3.2 years ago by shangguandong1996 ▴ 30
2
votes
2
replies
2.8k
views
Should I use Z-score standardization or Min-Max scaling in biological data ?
scale heatmap
3.3 years ago by shangguandong1996 ▴ 30
2
votes
1
reply
975
views
how to compare two gene lfc rank is similar or opposite ?
RNA-Seq
updated 3.4 years ago by ▴ 160 • written 3.4 years ago by ▴ 30
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