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questions
1
vote
3
replies
575
views
Pacbio Longread Depth of coverage
longread
pacbio
coverage
updated 3 months ago by
Bas
• 0 • written 3 months ago by
hellbio
▴ 520
0
votes
2
replies
2.9k
views
CNV tools for mitochondrial chromosome using whole-genome sequencing
cnv
chrMT
updated 4.2 years ago by
liufengxia9999
• 0 • written 8.0 years ago by
hellbio
▴ 520
1
vote
1
reply
1.1k
views
How to FLAG low quality SNPs in samtools VCF
samtools
VCF
updated 4.4 years ago by
Biostar
20 • written 4.4 years ago by
hellbio
▴ 520
1
vote
10
replies
2.0k
views
SNP Count from telomeres in sliding window
genome
SNP
updated 5.3 years ago by
Alex Reynolds
35k • written 5.3 years ago by
hellbio
▴ 520
1
vote
1
reply
1.6k
views
Human CNV VCF for Trios from whole-genomes
cnv
wgs
trios
updated 5.7 years ago by
trausch
★ 1.9k • written 5.7 years ago by
hellbio
▴ 520
57
votes
35
replies
15k
views
9 follow
How to get sample names and genotype for SNP in multi-sample VCF file
SNP
genotype
GATK
updated 7 months ago by
Kevin Blighe
88k • written 6.3 years ago by
hellbio
▴ 520
1
vote
1
reply
2.5k
views
How to filter VCF where at least x% of the individuals have DP>=10 and GQ>=20
vcf
filter
gatk
updated 6.3 years ago by
Pierre Lindenbaum
161k • written 6.3 years ago by
hellbio
▴ 520
23
votes
5
replies
37k
views
Create VCF file from .bim, .fam and .bed file
plinkseq
SNP
vcf
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
hellbio
▴ 520
0
votes
1
reply
2.1k
views
Phylogeny from Genotype Count data using MEGA
phylogeny
mega
updated 22 months ago by
Ram
43k • written 8.3 years ago by
hellbio
▴ 520
1
vote
10
replies
2.6k
views
Picard FilterVcf Javascript Usage
picard
filtervcf
javascript
updated 7.1 years ago by
Pierre Lindenbaum
161k • written 7.1 years ago by
hellbio
▴ 520
0
votes
10
replies
2.8k
views
SelectVariant JEXL expression to select private variants from multisample VCF
gatk
jexl
updated 7.5 years ago by
Pierre Lindenbaum
161k • written 7.5 years ago by
hellbio
▴ 520
9
votes
6
replies
5.7k
views
6 follow
Vcftools r2 Error: Insufficient sites remained after filtering or No data left for analysis!
vcftools
r2
LD
updated 7.5 years ago by
Chenfei Zheng
▴ 60 • written 8.0 years ago by
hellbio
▴ 520
2
votes
1
reply
4.5k
views
EPACTS association analysis
next-gen
updated 7.9 years ago by
das2000sidd
▴ 30 • written 9.5 years ago by
hellbio
▴ 520
1
vote
9
replies
2.3k
views
How to determine partial or complete gene overlap.
next-gen
updated 8.0 years ago by
EagleEye
7.5k • written 8.0 years ago by
hellbio
▴ 520
2
votes
4
replies
2.8k
views
Syntenic loci between species
synteny
updated 8.0 years ago by
mastal511
★ 2.1k • written 8.0 years ago by
hellbio
▴ 520
5
votes
5
replies
6.3k
views
samtools-1.1 rmdup error
samtools
rmdup
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
hellbio
▴ 520
9
votes
8
replies
14k
views
Java.Io.Filenotfoundexception ( Too Many Open Files ) :Picard Tools
picard
updated 18 months ago by
Ram
43k • written 11.6 years ago by
hellbio
▴ 520
0
votes
9
replies
3.7k
views
How to get sample names based on genotype from multi-sample vcf file
vcf
updated 21 months ago by
Ram
43k • written 8.5 years ago by
hellbio
▴ 520
3
votes
20
replies
7.6k
views
7 follow
How to Collapse Bedtools reciprocal overlap regions
bedtools
updated 21 months ago by
Ram
43k • written 8.5 years ago by
hellbio
▴ 520
1
vote
9
replies
2.7k
views
N as ALT allele
SNP
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
hellbio
▴ 520
0
votes
1
reply
2.7k
views
EPACTS association analysis
epacts
9.4 years ago by
hellbio
▴ 520
0
votes
0
replies
4.3k
views
Hom vs Het Variant calls
samtools
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
hellbio
▴ 520
2
votes
10
replies
5.6k
views
convert SOLID color space to base-space
SOLID
base space
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
hellbio
▴ 520
1
vote
3
replies
2.5k
views
NGS CNVtools with no controls
ngs
cnv
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
hellbio
▴ 520
5
votes
11
replies
5.8k
views
Optimum on-target coverage for exome-sequencing
next-gen
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
hellbio
▴ 520
1
vote
9
replies
7.7k
views
Change Notation Of Chromosome In Bam File
bam
samtools
updated 2.1 years ago by
Ram
43k • written 11.1 years ago by
hellbio
▴ 520
0
votes
2
replies
4.7k
views
Illumina Read Quality
ngs
illumina
updated 10.7 years ago by
Josh Herr
5.8k • written 10.7 years ago by
hellbio
▴ 520
2
votes
4
replies
3.0k
views
Wgs Coverage
coverage
gatk
updated 10.7 years ago by
William
★ 5.3k • written 10.7 years ago by
hellbio
▴ 520
13
votes
15
replies
18k
views
6 follow
Fastq Files From Different Flowcells
fastq
updated 10.8 years ago by
Pierre Lindenbaum
161k • written 10.8 years ago by
hellbio
▴ 520
4
votes
16
replies
5.3k
views
Percentage Of Exons Covered
exon
coverage
updated 10.9 years ago by
Jeremy Leipzig
22k • written 10.9 years ago by
hellbio
▴ 520
0
votes
3
replies
3.5k
views
How To Plot The Coverage Of A Region In The Genome
coverage
next-gen
updated 11.5 years ago by
Sean Davis
26k • written 11.5 years ago by
hellbio
▴ 520
49
votes
5
replies
27k
views
Difference Between Samtools And Gatk Algorithms
gatk
samtools
updated 11.5 years ago by
lh3
33k • written 11.5 years ago by
hellbio
▴ 520
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