NGS CNVtools with no controls
Hi,
There are a lot of NGS tools to detect CNVs from exome and whole genome sequencing data. However, most of the tools which I came across do need a control to calculate the CNVs. Could someone suggest some good tools which can work without control sample.
3 answers
WaveCNV doesn't require a control. It also creates some very nice figures automatically.
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Ram
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Zev.Kronenberg
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Zev.Kronenberg
cn.mops would do this with low FDR.
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Ram
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poisonAlien
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poisonAlien
FREEC can do that.
http://bioinfo-out.curie.fr/projects/freec/
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Fedor Gusev
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