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Josh Herr
Josh Herr
Role:
Moderator
Reputation:
5,770
Joined:
15.3 years ago
Last seen:
5.7 years ago
Location:
University of Nebraska
Google Scholar:
ZDnMer4AAAAJ
Twitter:
@number_three

I'm an assistant professor in the Department of Plant Pathology and The Center for Plant Science Innovation at the University of Nebraska.

You can read more about me and my interests at my blog Cyme & Cystidium or at my personal website or the website of my research lab.

You can also find me at Github, Software & Data Carpentry, and Twitter.

Latest posts by user
1 vote
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Answer: A: Shotgun metagenomics high duplication read rate - how high is too high?
written by Josh Herr Josh Herr
0 votes
0 replies
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Comment: C: Quick One Liner For Fastq Header Renaming
written by Josh Herr Josh Herr
1 vote
1 reply
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Comment: C: interpreting fasta header
written by Josh Herr Josh Herr
0 votes
1 reply
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Comment: C: Split ordered fasta file by alphabetical group using awk
written by Josh Herr Josh Herr
1 vote
5 replies
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Split ordered fasta file by alphabetical group using awk
awk fasta one-liner
updated by cpad0112 cpad0112 • written by Josh Herr Josh Herr
1 vote
1 reply
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Benchmarking single SNP mapping
snps bwa mapping bowtie wgsim
updated by Biostar Biostar • written by Josh Herr Josh Herr
0 votes
1 reply
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Comment: C: Relabel/rename OTU IDs in an OTU table using a taxonomy file
written by Josh Herr Josh Herr
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Answer: C: Get phylogenetic tree from abundance table
written by Josh Herr Josh Herr
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Answer: A: Change maximum number of sequences on source code of ClaustalW
written by Josh Herr Josh Herr
2 votes
0 replies
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Answer: A: Easy way to automatically save images of Krona HTML charts?
written by Josh Herr Josh Herr
1 vote
1 reply
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Answer: A: Correcting for functional annotation database bias
written by Josh Herr Josh Herr
2 votes
0 replies
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Comment: C: How to download raw sequence data from GEO/SRA
updated by Ram Ram • written by Josh Herr Josh Herr
4 votes
1 reply
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Answer: Answer: Confirmation of metagenomic data
updated by Ram Ram • written by Josh Herr Josh Herr
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Answer: Answer: Filtering BLAST results.
updated by Ram Ram • written by Josh Herr Josh Herr
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Comment: Comment: Homology Analysis Tool - An analysis tool that can be used for both BLAST and RD
updated by Ram Ram • written by Josh Herr Josh Herr
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Comment: Comment: Classify 16S Reads
updated by Ram Ram • written by Josh Herr Josh Herr
0 votes
1 reply
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Comment: Comment: Homology Analysis Tool - An analysis tool that can be used for both BLAST and RD
updated by Ram Ram • written by Josh Herr Josh Herr
0 votes
1 reply
0 views
Comment: Comment: comparison of species profiling simply using 16s rRNA in 16s rRNA amplicon seqeu
updated by Ram Ram • written by Josh Herr Josh Herr
0 votes
1 reply
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Comment: Comment: comparison of species profiling simply using 16s rRNA in 16s rRNA amplicon seqeu
updated by Ram Ram • written by Josh Herr Josh Herr
0 votes
1 reply
0 views
Comment: C: comparison of species profiling simply using 16s rRNA in 16s rRNA amplicon seqeu
updated by Ram Ram • written by Josh Herr Josh Herr
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