This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Syntenic loci between species

Dear all,

Could someone suggest how to find syntenic loci between species. I would like to find the syntenic regions for human-dog. could this be achieved by the lift-over conversion of human to dog genomic coordinates ?

synteny
• 3,438 views • link
updated by mastal511 mastal511 • written by hellbio hellbio

2 answers

The Cynteny server might help, it seems to have both human and dog in the list of species. See

http://cinteny.cchmc.org/

• 1 views • link
written by mastal511 mastal511

Could you let me know how is lifting over genomic ccordinates between two species different from syntenic loci?

• 1 views • link
written by hellbio hellbio

This previous discussion about synteny on biostars includes links on how to get synteny information from Ensembl:

How to find synteny between genes and Chromosomes?

• 1 views • link
written by mastal511 mastal511

the link in ensmbl is limited for a user specified synteny loci. Is there any option to find across the whole genome between 2 species?

• 1 views • link
written by hellbio hellbio

Log in to answer this question.

More posts like this