Convert Rat to Human region cordinates
Dear all,
I have regions from a human genome and I want to get the equivalent regions in rat genome. I saw a paper which use galaxy to do it but the lift-over convert genome coordinates tool doesn't work (I don't know why). My data looks like this:
#chr #start_position #end_position
1 12123 2342354
13 35235 2352352
X 235235 4565757
Could someone tell me how can I convert these regions from human genome to rat genome?
Thanks!
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1 answer
Try to reformat your data into bed format (something like this):
chr1 12123 2342354
chr13 35235 2352352
chrX 235235 4565757
and convert them using online liftOver.
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