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questions
11
votes
6
replies
20k
views
6 follow
Remove cells from Seurat based on a list
scRNA-seq
Seurat
updated 10 months ago by
Ram
43k • written 4.0 years ago by
elb
▴ 250
1
vote
1
reply
2.2k
views
Seurat: (Box)plot unscaled gene expression of a list of genes by cluster
Seurat
R
cell
single
updated 24 months ago by
jv
★ 1.8k • written 24 months ago by
elb
▴ 250
7
votes
4
replies
1.2k
views
How to distinguish INDELs from SNPs.
WGS
WES
updated 2.4 years ago by
Jorge Amigo
14k • written 2.4 years ago by
elb
▴ 250
1
vote
0
replies
583
views
Pairwise batch correction in Monocle3
single
cell
correction
batch
Monocle3
trajectories
2.6 years ago by
elb
▴ 250
4
votes
2
replies
1.0k
views
Plot average expression instead of -Log10(FDR/p-val) in volcano plot
plot
volcano
expression
gene
2.6 years ago by
elb
▴ 250
1
vote
2
replies
722
views
Batch correction on scRNA-Seq data
scRNA-Seq
3.0 years ago by
elb
▴ 250
6
votes
4
replies
1.6k
views
merge .fastq.gz files
RNA-seq
updated 3.1 years ago by
swbarnes2
14k • written 3.1 years ago by
elb
▴ 250
2
votes
3
replies
877
views
Combine two independent Seurat analysis into a single one
RNA-Seq
seurat
updated 3.2 years ago by
Ram
43k • written 3.2 years ago by
elb
▴ 250
7
votes
10
replies
1.2k
views
Forward and reverse single cell data analysis
RNA-Seq
updated 3.2 years ago by
swbarnes2
14k • written 3.2 years ago by
elb
▴ 250
8
votes
4
replies
4.8k
views
Normalization and batch effects correction in RNA-Seq data
RNA-Seq
Combat
updated 3.7 years ago by
rpolicastro
13k • written 3.7 years ago by
elb
▴ 250
3
votes
2
replies
617
views
Survival time computation
survival
3.8 years ago by
elb
▴ 250
2
votes
2
replies
701
views
Annotate a list of RefSeqIDs
genome
updated 4.0 years ago by
GenoMax
142k • written 4.0 years ago by
elb
▴ 250
2
votes
4
replies
1.1k
views
Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
ChIP-Seq
4.0 years ago by
elb
▴ 250
2
votes
4
replies
1.4k
views
Get the count.matrix from Chip-Seq BAM files
ChIP-Seq
updated 4.1 years ago by
ATpoint
82k • written 4.1 years ago by
elb
▴ 250
3
votes
2
replies
1.1k
views
Looping bedtools multicov on paired bam and bed files
ChIP-Seq
bedtools
updated 4.1 years ago by
ATpoint
82k • written 4.1 years ago by
elb
▴ 250
2
votes
5
replies
3.8k
views
Filtering the genes based on cpm in edgeR
RNA-Seq
edgeR
4.1 years ago by
elb
▴ 250
3
votes
4
replies
2.8k
views
Extract quality scores from aligned BAM files
ChIP-Seq
4.1 years ago by
elb
▴ 250
3
votes
5
replies
2.2k
views
Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
RNA-Seq
scRNA-Seq
sequencing
updated 4.4 years ago by
GenoMax
142k • written 4.4 years ago by
elb
▴ 250
1
vote
0
replies
821
views
chromHMM segmented genome annotation for genes
ChIP-Seq
4.4 years ago by
elb
▴ 250
4
votes
7
replies
2.7k
views
Chip-seq best practice data analysis
ChIP-Seq
updated 4.5 years ago by
ATpoint
82k • written 4.5 years ago by
elb
▴ 250
0
votes
0
replies
587
views
segmentation of Chip-exo DATA
ChIP-Seq
updated 4.6 years ago by
GenoMax
142k • written 4.6 years ago by
elb
▴ 250
10
votes
12
replies
1.7k
views
Variability explained by a core of genes
RNA-Seq
gene expression
threshold
variability
updated 4.7 years ago by
Kevin Blighe
87k • written 4.7 years ago by
elb
▴ 250
2
votes
1
reply
671
views
Annotate counts region by region
ChIP-Seq
bam
4.9 years ago by
elb
▴ 250
5
votes
5
replies
2.6k
views
Illumina bead chip data normalisation
Illumina
gene expression
limma
updated 4.9 years ago by
murshad.60ali
▴ 20 • written 5.6 years ago by
elb
▴ 250
2
votes
11
replies
1.6k
views
edgeR and design matrix with triplicates
edgeR
R
RNA-Seq
updated 4.9 years ago by
ATpoint
82k • written 4.9 years ago by
elb
▴ 250
2
votes
1
reply
1.7k
views
Preranked GSEA statistics
gsea
updated 4.9 years ago by
alserg
▴ 930 • written 5.0 years ago by
elb
▴ 250
2
votes
2
replies
2.3k
views
Statistical test for counts
statistical-test
cell-counts
updated 11 months ago by
Ram
43k • written 6.1 years ago by
elb
▴ 250
4
votes
1
reply
1.5k
views
LogFC calculation in multiple comparisons
rna-seq
edgeR
deseq
updated 5.1 years ago by
Ram
43k • written 5.1 years ago by
elb
▴ 250
2
votes
1
reply
1.2k
views
On the practical use of estimateDisp function
RNA-Seq
EDGEr
updated 5.1 years ago by
Ram
43k • written 5.1 years ago by
elb
▴ 250
0
votes
5
replies
1.5k
views
Statistics on differentially expressed genes
RNA-Seq
5.1 years ago by
elb
▴ 250
2
votes
9
replies
3.1k
views
differential gene expression analysis using log2(counts+1)
rna-seq
R
5.5 years ago by
elb
▴ 250
1
vote
0
replies
1.4k
views
Align two single cell experiments
R
single-cell
updated 11 months ago by
Ram
43k • written 5.5 years ago by
elb
▴ 250
11
votes
6
replies
8.4k
views
log transformation of rpkm
RNA-Seq
updated 5.6 years ago by
Charles Warden
8.2k • written 5.6 years ago by
elb
▴ 250
3
votes
3
replies
1.3k
views
Unsupervised selection of inter-cluster highly variable genes
R
RNA-Seq
variance
updated 11 months ago by
Ram
43k • written 5.6 years ago by
elb
▴ 250
3
votes
0
replies
1.8k
views
Detection p-value Illumina beadchip
illumina
beadchip
GEO
5.6 years ago by
elb
▴ 250
1
vote
2
replies
828
views
Independent groups normalisation
RNA-Seq
normalization
updated 5.6 years ago by
WouterDeCoster
47k • written 5.6 years ago by
elb
▴ 250
3
votes
1
reply
1.7k
views
sva output interpretation
RNA-Seq
sva
updated 5.6 years ago by
Devon Ryan
104k • written 5.6 years ago by
elb
▴ 250
4
votes
1
reply
1.2k
views
Cross platform gene expression comparison and threshold choice
RNA-Seq
Microarrays
Gene Expression
updated 5.7 years ago by
Devon Ryan
104k • written 5.7 years ago by
elb
▴ 250
4
votes
5
replies
2.5k
views
FeatureCounts on HG38
RNA-Seq
star
HG19
REFSEQ
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
elb
▴ 250
10
votes
8
replies
2.9k
views
Merge .bam files by groups of lanes
bam
samtools
RNA-Seq
updated 5.8 years ago by
WouterDeCoster
47k • written 5.8 years ago by
elb
▴ 250
2
votes
3
replies
1.6k
views
RNA-Seq error in htseq-count
RNA-Seq
next-gen
sequencing
updated 5.8 years ago by
swbarnes2
14k • written 5.8 years ago by
elb
▴ 250
2
votes
2
replies
1.2k
views
Network inference analysis with small sample size
network
sample size
gene expression
updated 6.1 years ago by
GenoMax
142k • written 6.1 years ago by
elb
▴ 250
1
vote
4
replies
1.8k
views
How to statistically compare multiple cell lines
qPCR
R
updated 6.1 years ago by
Devon Ryan
104k • written 6.1 years ago by
elb
▴ 250
3
votes
3
replies
3.6k
views
On the significance of the overlap between lists of genes
fisher test
overlap
significance
updated 6.2 years ago by
e.rempel
★ 1.1k • written 6.2 years ago by
elb
▴ 250
3
votes
5
replies
3.0k
views
How to choose the threshold of co-expression for gene expression networks
gene
expression
networks
threshold
updated 6.2 years ago by
sandeep.amberkar18
▴ 50 • written 6.2 years ago by
elb
▴ 250
8
votes
10
replies
1.7k
views
Looking for clinically validated anticancer drugs list
drugs
cancer
targets
clinical
human
updated 6.2 years ago by
Denise CS
★ 5.2k • written 6.2 years ago by
elb
▴ 250
5
votes
2
replies
2.2k
views
regulatory regions discovery and alignment
ChIP-Seq
genome
sequence
blast
updated 22 months ago by
Ram
43k • written 9.1 years ago by
elb
▴ 250
11
votes
9
replies
11k
views
7 follow
Check For Co-Expressed Genes In Microarray Experiments
correlation
clustering
microarray
gene
updated 3.1 years ago by
Ram
43k • written 11.5 years ago by
elb
▴ 250
2
votes
2
replies
1.9k
views
Looking For A Summary Of Network Topological Properties
network
graph
updated 11.5 years ago by
Istvan Albert
100k • written 11.5 years ago by
elb
▴ 250
13
votes
8
replies
8.0k
views
Looking For Network Visualization Tools
network
plot
updated 10 months ago by
Ram
43k • written 11.5 years ago by
elb
▴ 250
52 results • Page
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