This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Plot average expression instead of -Log10(FDR/p-val) in volcano plot

Hi guys, is there a way to plot the average expression of a list of genes on the y axis of a volcano plot instead of -log10(FDR/P-val) using EnhancedVolcano or another way (like ggplot2)?

Thank you in advance

plot volcano expression gene
• 1,744 views • link
written by elb elb

1 answer

Yes, this is then called an MA-plot, where usually the average expression is on the x-axis and the logFC is on the y-axis.

See EnhancedVolcano becomes a pseudo-EnhancedMA

• 0 views • link
written by ATpoint ATpoint

Wooooow thank you very much!

• 0 views • link
written by elb elb

Log in to answer this question.

More posts like this