Seurat: (Box)plot unscaled gene expression of a list of genes by cluster

Hi guys, I would like to (box)plot the gene expression (unscaled data) of a list of genes using my desired order of clusters. Is there a fast way to do it?

Thank you in advance

seurat r cell single

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updated 4.2 years ago by jv

• written 4.2 years ago by elb

I don't know about a box plot, but there are several other visualization options such as violin plots using VlnPlot. Set features to the vector of genes you want to visualize, slot to count for unscaled, untransformed gene counts, and idents to specify which clusters (i think).

https://satijalab.org/seurat/reference/vlnplot
https://satijalab.org/seurat/articles/visualization_vignette.html

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written 4.2 years ago by jv

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