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Comment: Comment: Problem to create count file through HTSeq application
16 months ago by modarzi ▴ 170
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2
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737
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Problem to create count file through HTSeq application
HTSeq RNA-seq count HISAT2
16 months ago by modarzi ▴ 170
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0
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879
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Comment: Comment: how to map peptide to Protein?
16 months ago by modarzi ▴ 170
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2
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879
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how to map peptide to Protein?
protein Proteomics peptide TCGA
16 months ago by modarzi ▴ 170
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0
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366
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How does find relative pathway to transfer RNA?
pathway downstream tRNA
2.3 years ago by modarzi ▴ 170
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1.1k
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Comment: Comment: how does annotate circular RNA ?
2.4 years ago by modarzi ▴ 170
3
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3
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1.1k
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how does annotate circular RNA ?
R Genome circular RNA Position
updated 2.4 years ago by ★ 1.3k • written 2.4 years ago by ▴ 170
7
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7
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2.0k
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problem for gene survival analysis through "Survival" package in R
TCGA Survival Analysis Gene Survival Analysis R
updated 2.7 years ago by ▴ 50 • written 5.4 years ago by ▴ 170
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1.4k
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Comment: Comment: how to solve this error when I want to install HISAT2? "E: Unable to locate pack
2.7 years ago by modarzi ▴ 170
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2
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1.4k
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how to solve this error when I want to install HISAT2? "E: Unable to locate package hisat2"
hisat2 aligner
2.7 years ago by modarzi ▴ 170
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1
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590
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How does find the sequence of each oligonucleotide in microarray probe?
Affymetrics technology probe microarray
updated 2.7 years ago by 21k • written 2.7 years ago by ▴ 170
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1
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808
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Comment: C: how to annotate Circular RNA gene type?
3.2 years ago by modarzi ▴ 170
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3
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808
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how to annotate Circular RNA gene type?
RNA-Seq Circular RNA annotation
3.2 years ago by modarzi ▴ 170
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5
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953
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should each RNA-seq has Circular RNA?
alignment RNA-Seq Circular RNA CIRI2
written 3.3 years ago by ▴ 170
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1.0k
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Comment: C: problem to aligning FASTQ through BWA aligner
3.2 years ago by modarzi ▴ 170
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0
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1.0k
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Comment: C: problem to aligning FASTQ through BWA aligner
3.2 years ago by modarzi ▴ 170
3
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5
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1.0k
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problem to aligning FASTQ through BWA aligner
genome BWA alignment
updated 3.2 years ago by 3.6k • written 3.2 years ago by ▴ 170
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1
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1.1k
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Comment: C: is "sequence Duplication levels" has bad effect on Alignment process?
3.3 years ago by modarzi ▴ 170
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0
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1.1k
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Comment: C: is "sequence Duplication levels" has bad effect on Alignment process?
3.3 years ago by modarzi ▴ 170
2
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6
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1.1k
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is "sequence Duplication levels" has bad effect on Alignment process?
bwa FastQC RNA-seq
updated 3.3 years ago by 82k • written 3.3 years ago by ▴ 170
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2
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1.5k
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Comment: C: what should be view inside of SAM file?
3.3 years ago by modarzi ▴ 170
7
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6
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1.5k
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what should be view inside of SAM file?
SAM BWA
updated 3.3 years ago by ★ 5.1k • written 3.3 years ago by ▴ 170
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1
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953
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Comment: C: should each RNA-seq has Circular RNA?
3.3 years ago by modarzi ▴ 170
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1
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953
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Comment: C: should each RNA-seq has Circular RNA?
3.3 years ago by modarzi ▴ 170
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0
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876
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how to find consensus modules between 2 datasets by different platform through WGCNA
WGCNA consensus module RNA-seq microarray
3.5 years ago by modarzi ▴ 170
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1
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1.5k
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Comment: C: How can I annotate microarray data set through Ensemble Id?
3.8 years ago by modarzi ▴ 170
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3
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1.5k
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How can I annotate microarray data set through Ensemble Id?
Affymetrix Ensemble Id GPL 96
updated 2.4 years ago by ★ 1.9k • written 3.8 years ago by ▴ 170
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1
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1.4k
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Comment: C: how does find the normalization method in GSE in GEO for microarray data?
3.8 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: how does find the normalization method in GSE in GEO for microarray data?
3.8 years ago by modarzi ▴ 170
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5
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1.4k
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how does find the normalization method in GSE in GEO for microarray data?
MAS 5.0 method normalization microarray
3.8 years ago by modarzi ▴ 170
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0
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896
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finding AUC and AUCPR in gene regulatory network through ARACNE and CLR methods
AUC AUCPR GRN ARACNE CKR
3.9 years ago by modarzi ▴ 170
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0
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7.0k
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Comment: C: How to compare 2 separate coexpression networks each with the same genes?
3.9 years ago by modarzi ▴ 170
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0
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1.9k
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Comment: C: Problem relate to running ClueGO in Cytoscape
3.9 years ago by modarzi ▴ 170
4
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2
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1.9k
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Problem relate to running ClueGO in Cytoscape
Cytoscape ClueGO CluePedia
updated 4.0 years ago by ▴ 620 • written 4.0 years ago by ▴ 170
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1
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4.3k
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Comment: C: Problem for Running "multivariate Cox proportional hazards model"
4.1 years ago by modarzi ▴ 170
0
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1
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4.3k
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Comment: C: Problem for Running "multivariate Cox proportional hazards model"
4.1 years ago by modarzi ▴ 170
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2
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4.3k
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Comment: C: Problem for Running "multivariate Cox proportional hazards model"
4.1 years ago by modarzi ▴ 170
0
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1
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4.3k
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Comment: C: Problem for Running "multivariate Cox proportional hazards model"
4.1 years ago by modarzi ▴ 170
0
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1
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4.3k
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Comment: C: Problem for Running "multivariate Cox proportional hazards model"
4.1 years ago by modarzi ▴ 170
2
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12
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4.3k
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Problem for Running "multivariate Cox proportional hazards model"
multivariate Cox Survival Analysis cox regression
updated 2.3 years ago by • 0 • written 4.1 years ago by ▴ 170
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1
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38k
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Comment: C: Survival analysis with gene expression
4.3 years ago by modarzi ▴ 170
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1
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38k
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Comment: C: Survival analysis with gene expression
4.3 years ago by modarzi ▴ 170
0
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1
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38k
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Comment: C: Survival analysis with gene expression
4.3 years ago by modarzi ▴ 170
0
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1
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38k
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Comment: C: Survival analysis with gene expression
4.3 years ago by modarzi ▴ 170
0
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1
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38k
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Comment: C: Survival analysis with gene expression
4.3 years ago by modarzi ▴ 170
2
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3
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2.2k
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Comment: C: How to convert the ordinal categorical trait in the WGCNA?
4.4 years ago by modarzi ▴ 170
1
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0
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768
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How to use Sex of Patients for Constructing Co-expression Network through WGCNA
RNA-Seq WGCNA
4.4 years ago by modarzi ▴ 170
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1
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1.6k
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Comment: C: which Length of gene is valid for using in Transcript Per million (TPM)?
4.4 years ago by modarzi ▴ 170
3
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4
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1.6k
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which Length of gene is valid for using in Transcript Per million (TPM)?
RNA-Seq Normalization TPM
updated 4.4 years ago by 87k • written 4.4 years ago by ▴ 170
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0
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45k
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Comment: C: Using transcripts per million (TPM)
4.4 years ago by modarzi ▴ 170
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