how to map peptide to Protein?
Hi, I downloaded the Proteome profiling of the TCGA samples. the structure of each record is as below:
AGID lab_id catalog_number set_id peptide_target TCGA-BH-A1FN-11A
AGID00100 882 sc-628 Old 1433BETA 0.67451
That is a sample record for TCGA-BH-A1FN-11A. Now, I need to know which computational way can map the 'peptide_target' to the protein? because I would like to find a gene symbol that codes to my target protein(map to peptide).
I appreciate it if anybody shares his/her comment with me.
Best Regards
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You can find the reference files here: https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files
Really thank you for your comment.