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Showing :
questions
0
votes
10
replies
703
views
Nextflow ERROR : Timeout waiting for connection from pool
nextflow
5 weeks ago by
dzisis1986
▴ 70
0
votes
2
replies
286
views
Correlation Analysis of a particular gene and the DE expressed genes between two conditions
R
correlation
RNA-seq
3 months ago by
dzisis1986
▴ 70
0
votes
0
replies
195
views
Correlating all other genes with a hub gene - measuring the expression of a particular gene
R
RNA-seq
updated 3 months ago by
Ram
43k • written 3 months ago by
dzisis1986
▴ 70
2
votes
8
replies
623
views
Problem in Salmon when indexing Rattus_norvegicus
salmon
updated 3 months ago by
dsull
★ 6.0k • written 3 months ago by
dzisis1986
▴ 70
1
vote
3
replies
512
views
Download files from EBI ftp
ftp
updated 7 months ago by
ATpoint
82k • written 7 months ago by
dzisis1986
▴ 70
1
vote
4
replies
684
views
How to understand if a GWAS sample comes from Chromosome X or Y
python
8 months ago by
dzisis1986
▴ 70
1
vote
6
replies
1.0k
views
Biomart doesnt work in R for big input data. How to run it in Python ?
biomart
R
Python
9 months ago by
dzisis1986
▴ 70
1
vote
2
replies
407
views
Gtf or GFF with target genes regulated by ncRNAs
databases
ncRNAs
genes
gtf
9 months ago by
dzisis1986
▴ 70
0
votes
0
replies
254
views
Transform txt files with SNPs from ForenSeq kit to proper format for plink
plink
python
SNPs
10 months ago by
dzisis1986
▴ 70
0
votes
0
replies
337
views
Use GraphQL to query miltiple rsIDs from GWAS study in Open Targets
OpenTargets
GWAS
GraphQL
13 months ago by
dzisis1986
▴ 70
0
votes
5
replies
1.3k
views
Difference in number of DEGs from Deseq2 and limma-voom
RNAseq
Deseq2
limma
22 months ago by
dzisis1986
▴ 70
2
votes
5
replies
1.4k
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
RNA-seq
Limma
Differential-gene-Expression
R
updated 4 weeks ago by
Ram
43k • written 23 months ago by
dzisis1986
▴ 70
3
votes
9
replies
1.4k
views
Compare RNA seq mapping results from STAR and BWA in R
RNAseq
R
updated 2.1 years ago by
Istvan Albert
100k • written 2.1 years ago by
dzisis1986
▴ 70
0
votes
4
replies
767
views
How can i find a gene list in .bed with all hemoglobin/ globin genes in Human Genome ?
genes
gemonr
2.2 years ago by
dzisis1986
▴ 70
11
votes
25
replies
3.0k
views
Use cat to sort multiple fastq files in a directory
bash
updated 2.2 years ago by
Istvan Albert
100k • written 2.2 years ago by
dzisis1986
▴ 70
3
votes
7
replies
1.5k
views
Run multiple times samtools and sed for a big number of bam files in folder
samtools
bash
bam
updated 2.4 years ago by
cmdcolin
★ 3.8k • written 2.4 years ago by
dzisis1986
▴ 70
0
votes
2
replies
1.7k
views
Low Mapping/Alignment rates with bowtie2 in mouse reduced genome
4cseq
mapping
bowtie2
libraryoffragments
mm10
updated 2.4 years ago by
ATpoint
82k • written 6.1 years ago by
dzisis1986
▴ 70
2
votes
2
replies
697
views
Imputation and SNPs pipeline
Imputation
SNPs
pipeline
3.2 years ago by
dzisis1986
▴ 70
0
votes
3
replies
1.9k
views
Problem in visualizing bam files to IGV
bam
igv
view
4.4 years ago by
dzisis1986
▴ 70
2
votes
5
replies
1.2k
views
Merge overlapping intervals in a bed file containing different chromosomes
merge
bed
script
updated 4.6 years ago by
Pierre Lindenbaum
161k • written 4.6 years ago by
dzisis1986
▴ 70
1
vote
7
replies
1.4k
views
How can I reproduce features of signalp TMHMM and phobius?
signal peptide
TM
transmembrane
updated 4.7 years ago by
Mensur Dlakic
★ 27k • written 4.7 years ago by
dzisis1986
▴ 70
2
votes
14
replies
3.2k
views
Kruskal-Wallis rank test between different subsets of data table
R
statistics
kruskal-walls test
updated 5.3 years ago by
gbl1
▴ 80 • written 5.3 years ago by
dzisis1986
▴ 70
1
vote
7
replies
1.7k
views
Use ART illumina to create miRNA simulated data
miRNA
art_illumina
simulate
5.6 years ago by
dzisis1986
▴ 70
5
votes
16
replies
6.3k
views
Remove duplicate lines based on specific columns
r
python
intersect
reads
updated 5.6 years ago by
Ram
43k • written 5.6 years ago by
dzisis1986
▴ 70
1
vote
3
replies
1.2k
views
Reconstruct bed file from tab
R
chr
script
python
updated 5.8 years ago by
ATpoint
82k • written 5.8 years ago by
dzisis1986
▴ 70
6
votes
7
replies
2.8k
views
How can I parse arguments from a config file to create a command line menu in R ?
R
arguments
script
updated 5.8 years ago by
Joe
21k • written 5.8 years ago by
dzisis1986
▴ 70
1
vote
10
replies
2.5k
views
Intersect counts with fragment regions
bedtools
intersect
R
ranges
readcounts
updated 5.9 years ago by
Alex Reynolds
35k • written 5.9 years ago by
dzisis1986
▴ 70
1
vote
1
reply
1.9k
views
Create a cytoband file for arabidopsis thanilana TAIR10 data. RCircos plot
cytoband
RCircos
bed
arabidopsis
6.0 years ago by
dzisis1986
▴ 70
5
votes
8
replies
1.2k
views
Reconstruct bed file out of columns
columns
R
bed
script
python
updated 6.0 years ago by
zx8754
11k • written 6.0 years ago by
dzisis1986
▴ 70
1
vote
6
replies
2.0k
views
Create a library of fragments from restriction enzyme AAGCTT
4cseq
restrictionenzume
sequencing
fragments
6.0 years ago by
dzisis1986
▴ 70
0
votes
0
replies
910
views
w4Cseq and T.Arabidopsis
pipelines
4C-seq
ngs
updated 11 months ago by
Ram
43k • written 6.2 years ago by
dzisis1986
▴ 70
0
votes
5
replies
2.6k
views
Arabidopsis Thaliana genomic features
thaliana arabidopsis
genomic features
Tss
TTS
CPG
updated 6.1 years ago by
lieven.sterck
15k • written 6.1 years ago by
dzisis1986
▴ 70
0
votes
2
replies
1.2k
views
Use Blast for the three species of Leishmania in order to take only the common sequences in fasta file
blast
leismania
filter
sequences
fasta
updated 6.3 years ago by
Biostar
20 • written 6.5 years ago by
dzisis1986
▴ 70
2
votes
3
replies
1.4k
views
Identify protein sequences from L.infantum with more than 60% conservancy with other Leishmania species
blast
blastp
proteins
leismania
commandline
updated 6.4 years ago by
ori
▴ 50 • written 6.4 years ago by
dzisis1986
▴ 70
18
votes
47
replies
4.7k
views
Fastq Trimmer by pattern
fastq
trimming
reads
terminal
7.3 years ago by
dzisis1986
▴ 70
3
votes
12
replies
5.9k
views
Bowtie 2: bowtie build does not create .rev index files
bowtie2
build
index
error
7.3 years ago by
dzisis1986
▴ 70
1
vote
1
reply
1.7k
views
How to confirm forward and reverse primer matches the beggining of each read and keep only reads with fwd and rev primers ?
sequencing
fastq
filtering
reads
primers
updated 7.3 years ago by
Pierre Lindenbaum
161k • written 7.3 years ago by
dzisis1986
▴ 70
37 results • Page
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