Correlating all other genes with a hub gene - measuring the expression of a particular gene
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3 months ago
dzisis1986 ▴ 70

Hi, i would like to see the expression of a particular gene (SNCA in my case) in terms of other DE genes in RNAseq. I would like to perform a correlation analysis of the particular hub gene. I found this and is useful https://support.bioconductor.org/p/53554/. I was wondering what kind of graph I should use to visualize the expression of SNCA in terms of other genes in R?

Further more how can I measure and see if it is less or more the expression of the particular gene in control vs condition? A simple box plot will be ok?

R RNA-seq • 194 views
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