Correlating all other genes with a hub gene - measuring the expression of a particular gene
Hi, i would like to see the expression of a particular gene (SNCA in my case) in terms of other DE genes in RNAseq. I would like to perform a correlation analysis of the particular hub gene. I found this and is useful https://support.bioconductor.org/p/53554/. I was wondering what kind of graph I should use to visualize the expression of SNCA in terms of other genes in R?
Further more how can I measure and see if it is less or more the expression of the particular gene in control vs condition? A simple box plot will be ok?
• 496 views
•
link
updated
by
Ram
•
written
by
dzisis1986 •
•
written
by
dzisis1986 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Correlation Analysis of a particular gene and the DE expressed genes between two conditions
written by dzisis1986 •
-
WGCNA number of modules issue
written by 1215045934 •
-
Visualization of fold changes of candidate genes as heatmap across multiple independent experiments
written by VBer
-
How can I show the group of gene's expression across Samples?
written by John
-
Reproduction GTex Box plot
written by peris
-
Using RNAseq to measure gene expression in a tissue when the gene is NOT differentially expressed
written by Rduncan
-
How to compare the correlation between the RNAseq data from human and mouse tumor?
written by ifudontmind_plzz
-
Is It Valid To Convert A Fold Change Matrix Into Z Score?
written by k.nirmalraman
-
Unsupervised Clustering/Heatmap Of Paired Sample Rna-Seq Expression
written by bstephenwhite •
-
Existing Tools For Generating Web Based Network Visualisation
written by Djie •
