Hi all, This is probably a very basic question, but I am trying to use SICER (or EPIC) to analyze my ChIP-seq data. The samples …

Hey guys do you know where I can find the indexed genome for Arabidopsis thaliana for using with hitsat2? Thanks for any direction. I think …

Hello everyone, Would anyone be interested in beta testing a new RNA-seq data analysis app? Currently, we only support E. coli MG1655, A. thaliana, or …

Hi, Following chip-seq analysis, the distribution of peaks over chromosome regions was computed using chippeakanno (assignChromosomeRegion). Now, I am trying to find out the actual …

Hello I would like to use RCircos for arabidopsis thaliana data in order to create ideograms. What i am using needs a cytoband.bed file . …

Hi all, I have a genome-wide list of germline SNPs and short indels for Arabidopsis thaliana, which I generated with Varscan. Regardless of the tool …

I am wondering where i can find bed files for genomic features (TSS, TTS, CpG sites) of Arabidopsis Thaliana. I want to use a tool …

![enter image description here][1]Hello everyone! I am trying to do alternative splicing analysis for *Arabidopsis thaliana* using altanalye software. But for this species, RNA-Seq option …

Hi, Does anyone know where can I download the transcriptome data or GO annotation for A. thaliana bud stage? Would appreciate all the help I …

<p>Hi,</p> <p>Anyone know the best (or recommended) kmer size to use with sailfish and Arabidopsis thaliana RNA-seq data?</p> <p>Background: To use sailfish, you first must …