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Showing :
questions
8
votes
8
replies
5.5k
views
How To Control Wgsim Base Qualities?
fastq
gatk
updated 12 months ago by
André
• 0 • written 12.4 years ago by
Pascal
★ 1.5k
12
votes
6
replies
4.0k
views
Zygosity Of A Copy Number Variant
variant
cnv
genome
updated 4.8 years ago by
Biostar
20 • written 12.3 years ago by
Pascal
★ 1.5k
2
votes
0
replies
2.4k
views
Converting Wgsim Output To Vcf
vcf
variant
updated 7.7 years ago by
Biostar
20 • written 12.4 years ago by
Pascal
★ 1.5k
32
votes
8
replies
47k
views
7 follow
Difference Between "Pipeline" And "Workflow" ?
next-gen
sequencing
written 12.2 years ago by
Pascal
★ 1.5k
10
votes
2
replies
3.7k
views
How Could I Handle Bed Files In Java?
bed
java
updated 9.0 years ago by
kulvait
▴ 270 • written 12.3 years ago by
Pascal
★ 1.5k
1
vote
4
replies
3.8k
views
Why Do I Get "Floating Point Exception" Using Samview Tview ?
samtools
updated 9.0 years ago by
Biostar
20 • written 12.5 years ago by
Pascal
★ 1.5k
15
votes
9
replies
15k
views
How To Get The "Library Insert Size" Out Of A Sam/Bam File?
sam
updated 9.6 years ago by
Biostar
20 • written 12.5 years ago by
Pascal
★ 1.5k
6
votes
1
reply
5.3k
views
The Meaning Of "Seq Being Reverse Complemented" In Sam Format
sam
structural
updated 10.1 years ago by
Biostar
20 • written 12.5 years ago by
Pascal
★ 1.5k
10
votes
5
replies
9.5k
views
Samtools Tview Legend
samtools
alignment
visualization
viewer
updated 10.7 years ago by
Puriney
▴ 330 • written 12.6 years ago by
Pascal
★ 1.5k
2
votes
4
replies
3.5k
views
How Reads Have Been Mapped In My Bam File?
bam
alignment
updated 12.2 years ago by
Vikas Bansal
★ 2.4k • written 12.2 years ago by
Pascal
★ 1.5k
17
votes
4
replies
4.5k
views
Why Does Ucsc "Exons" Track Overlap With "Introns" Track?
ucsc
browser
updated 12.2 years ago by
Malachi Griffith
20k • written 12.2 years ago by
Pascal
★ 1.5k
9
votes
7
replies
7.5k
views
Where Could I Download Mappability Data To Compare My Cnv Calls With?
cnv
updated 12.2 years ago by
Casey Bergman
18k • written 12.2 years ago by
Pascal
★ 1.5k
5
votes
2
replies
7.7k
views
Filtering Out Reads Based On Base Quality With Samtools Seems Not To Work Properly
samtools
updated 12.3 years ago by
FGV
▴ 170 • written 12.3 years ago by
Pascal
★ 1.5k
14
votes
11
replies
6.4k
views
Calculating Tn (True Negatives) For An Indel Detection Method
indel
updated 12.3 years ago by
Michael
54k • written 12.3 years ago by
Pascal
★ 1.5k
6
votes
3
replies
3.2k
views
To Simulate Heterozygous Variations In Genome
variant
genome
updated 12.3 years ago by
Attila Berces
▴ 10 • written 12.3 years ago by
Pascal
★ 1.5k
16
votes
3
replies
6.0k
views
Frequency Of Homozygous Indels Vs Heterozygous Indels
variant
indel
genome
updated 12.3 years ago by
lh3
33k • written 12.3 years ago by
Pascal
★ 1.5k
3
votes
6
replies
3.5k
views
Can You Do Some Recommendations For An Indel/Snp/Cnv Simulator?
variant
structural
genome
simulation
updated 12.3 years ago by
lh3
33k • written 12.3 years ago by
Pascal
★ 1.5k
6
votes
6
replies
4.2k
views
Ratio Indels/Snps
variation
simulation
genome
next-gen
sequencing
updated 12.3 years ago by
Zam Iqbal
▴ 50 • written 12.3 years ago by
Pascal
★ 1.5k
21
votes
11
replies
12k
views
6 follow
Where Can I Find Data Sets Of Cancer Publicly Available?
dataset
cancer
sam
updated 12.4 years ago by
Yogesh Pandit
▴ 520 • written 12.4 years ago by
Pascal
★ 1.5k
1
vote
1
reply
1.9k
views
How To Convert Wgsim Output Into A Vcf File?
vcf
12.4 years ago by
Pascal
★ 1.5k
8
votes
9
replies
4.0k
views
Structural Variation Detection On A Short Reads Simulation
structural
indel
bowtie
updated 12.5 years ago by
Wolf
▴ 130 • written 12.5 years ago by
Pascal
★ 1.5k
5
votes
13
replies
5.1k
views
Short Read Simulator For Cnv Indel?
simulation
cnv
next-gen
sequencing
updated 12.5 years ago by
Stefano Berri
4.4k • written 12.5 years ago by
Pascal
★ 1.5k
4
votes
2
replies
2.0k
views
Origin Of Different Libraries In Sam File
sam
sequencing
library
updated 12.5 years ago by
Chris Miller
22k • written 12.5 years ago by
Pascal
★ 1.5k
3
votes
2
replies
6.8k
views
Sorting Bam File For Gatk Read-Pair Walkers
gatk
samtools
sam
bam
sort
updated 12.5 years ago by
Bpow
▴ 280 • written 12.5 years ago by
Pascal
★ 1.5k
8
votes
4
replies
3.3k
views
Cnv Detection - Alignment Files With Reported Cnv Needed
cnv
updated 12.5 years ago by
Ryan D
★ 3.4k • written 12.5 years ago by
Pascal
★ 1.5k
4
votes
7
replies
3.6k
views
Running My Own Walker On Gatk
gatk
updated 12.5 years ago by
Pierre Lindenbaum
161k • written 12.5 years ago by
Pascal
★ 1.5k
4
votes
1
reply
6.7k
views
Structural Variation Detection Using Gatk
gatk
structural
updated 12.6 years ago by
User 59
13k • written 12.6 years ago by
Pascal
★ 1.5k
29
votes
7
replies
2.9k
views
6 follow
How Do You Generate/Obtain The Citation Block From A Given Paper?
reference
literature
updated 12.6 years ago by
Giovanni M Dall'Olio
28k • written 12.6 years ago by
Pascal
★ 1.5k
20
votes
8
replies
7.1k
views
6 follow
Snp With More Than One Base ?
snp
updated 12.6 years ago by
Aaronquinlan
12k • written 12.6 years ago by
Pascal
★ 1.5k
29 results • Page
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