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FGV
FGV
Reputation:
170 (Trusted)
Joined:
14.5 years ago
Last seen:
1.3 years ago
Location:
Denmark

about me

Latest posts by user
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1 reply
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Comment: Comment: BBtools specify java temp dir (or other java options)
written by FGV 17
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0 replies
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Comment: Comment: Bowtie2 - Snakemake
written by FGV 17
0 votes
3 replies
1.3K views
BBtools specify java temp dir (or other java options)
bbtools
updated by GenoMax 16K • | written by FGV 17
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1 reply
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Comment: Comment: (WHY?) Corrupted (truncated) fq.gz files when downloaded from safari
written by FGV 17
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Answer: Answer: When to merge BAM or SAM files?
updated by Ram 4.5K • | written by FGV 17
0 votes
2 replies
1.5K views
fasterq-dump downloads two or three files from a single-end run
fasterq-dump
updated by Istvan Albert 10K • | written by FGV 17
1 vote
1 reply
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Comment: Comment: How to limit the resources of a snakemake rule?
written by FGV 17
2 votes
1 reply
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Answer: Answer: How to limit the resources of a snakemake rule?
written by FGV 17
1 vote
0 replies
959 views
GATK GenotypeGVCFs changes HET to REF_ALT
genotypegvcfs gatk genotyping haplotypecaller joint
written by FGV 17
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Comment: C: GNU parallel command with several multiple arguments
written by FGV 17
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1 reply
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Comment: C: GNU parallel command with several multiple arguments
written by FGV 17
1 vote
5 replies
12K views
GNU parallel command with several multiple arguments
parallel gnu parallel
updated by ole.tange 448 • | written by FGV 17
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1 reply
1.3K views
Merge VCF INFO tags
vcf tags info
written by FGV 17
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1 reply
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Comment: A: filter VCF based on info field that has a key but no value
written by FGV 17
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2 replies
3.7K views
Annotate VCF on specific transcripts (ANN field)
vcf snpeff snpsift
updated by Pierre Lindenbaum 17K • | written by FGV 17
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0 replies
1.1K views
Query UCSC Browser
ucsc api
written by FGV 17
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1 reply
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Answer: A: Paired-end and single-end reads combined during RNAseq - acceptable?
written by FGV 17
1 vote
0 replies
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Answer: A: Mapping scaffolds to chromosomes
written by FGV 17
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0 replies
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Answer: A: How can I make GATK fasta alternate reference maker faster
written by FGV 17
1 vote
1 reply
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Answer: A: GNU parallel error: Command line too long
written by FGV 17
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