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0
votes
2
replies
404
views
Difference in count values depends on tool and reference genome version
RNA-seq
updated 11 weeks ago by 43k • written 11 weeks ago by ▴ 10
4
votes
3
replies
328
views
Getting less DE genes when incorporating all samples
RNA-seq differential-expression deseq2
updated 12 weeks ago by ★ 1.8k • written 12 weeks ago by ▴ 10
0
votes
0
replies
303
views
How to find promoters (such as GC box and TATA box) in set of genes using bioinformatics analysis ?
promoter motif
updated 5 months ago by 43k • written 5 months ago by ▴ 10
2
votes
1
reply
705
views
DESEq2 results : low counts too many genes
RNA-seq differential-expression deseq2
updated 7 months ago by 43k • written 8 months ago by ▴ 10
0
votes
5
replies
769
views
DESEQ2 analysis - PCA plot
RNA-seq differential-expression deseq2
updated 9 months ago by ▴ 370 • written 9 months ago by ▴ 10
3
votes
1
reply
367
views
Reference genome to map embryonic mouse sequences
genome RNA-seq mouse bulk
updated 12 months ago by 82k • written 12 months ago by ▴ 10
2
votes
3
replies
995
views
How to make scanpy read gene names to plot instead of read sequences
single-cell scanpy scRNA-seq
updated 17 months ago by 43k • written 17 months ago by ▴ 10
0
votes
0
replies
315
views
Carrying out differential analysis for Abseq data
scRNAseq RNAseq Abseq expression Differential
17 months ago by shome ▴ 10
0
votes
1
reply
396
views
Bioinformatics method to find which genes have GC and TATA boxes ?
GCbox
updated 17 months ago by 43k • written 23 months ago by ▴ 10
3
votes
4
replies
1.2k
views
What is cut-off for significance in DE analysis in sc-RNA seq data
bulk expression differential single RNA-seq cell
updated 24 months ago by 82k • written 24 months ago by ▴ 10
0
votes
1
reply
775
views
How to find which DE genes fall under statistically significant criteria using scanpy DEG analysis
RNA-seq expression cell single differential scanpy
2.0 years ago by shome ▴ 10
0
votes
0
replies
333
views
How to obtain all gene details from each of the clusters formed in UMAP
scanpy Sc-RNA
2.2 years ago by shome ▴ 10
1
vote
4
replies
798
views
How to analyse RNA-seq data stored over certain period of time
RNA-seq bulk
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 10
0
votes
1
reply
600
views
Tools to detect the bacterial sequences from mouse RNA-seq data
single RNA-seq cell
updated 2.3 years ago by ▴ 340 • written 2.3 years ago by ▴ 10
2
votes
1
reply
1.6k
views
How to combine UMAP plots from multiple datasets
scanpy Seurat scRNAseq UMAP
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 10
1
vote
3
replies
1.2k
views
Finding ORFs from RNA-seq Sequence Data of eukaryotic species
nucleotide rna dna genome
updated 3.1 years ago by ★ 2.5k • written 3.1 years ago by ▴ 10
0
votes
1
reply
651
views
Improving Classification accuracy and precision of classifier
protein machinelearning CNN
updated 3.4 years ago by • 0 • written 3.4 years ago by ▴ 10
3
votes
2
replies
761
views
Any other way to validate RNA-seq data if qPCR tests is not available?
sequencing genome
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 10
1
vote
1
reply
591
views
Does DESeq2 can do hypothesis testing between multiple treatment groups or the tests just done between the genes ?
RNA-Seq
3.9 years ago by shome ▴ 10
9
votes
12
replies
1.9k
views
combine fasta sequences in combination from two different files
unix fasta awk shell
updated 4.2 years ago by 161k • written 4.2 years ago by ▴ 10
0
votes
3
replies
1.5k
views
No output when trying to obtain protein sequence from PDB file
PDB biopython
updated 4.2 years ago by 142k • written 4.2 years ago by ▴ 10
0
votes
0
replies
740
views
pymol script to only select 5 chains within a distance from a reference and save the selection
pymol visualisation python pymol scripting
4.5 years ago by shome ▴ 10
0
votes
5
replies
2.7k
views
Downloading set of fasta sequences based on gene id
gene sequence geneid fasta
updated 5.0 years ago by ★ 3.7k • written 5.0 years ago by ▴ 10
0
votes
1
reply
772
views
Determining which strain trinity contig belongs to after denovoassembly
RNA-Seq assembly SNP
5.1 years ago by shome ▴ 10
1
vote
2
replies
1.4k
views
Meaning of alias in Sequence Read Archive
RNA-Seq ncbi
updated 8.2 years ago by 142k • written 8.2 years ago by ▴ 10
2
votes
1
reply
4.2k
views
How to find chromosome coordinates based on gene locus
gene ncbi genome locus
updated 21 months ago by 43k • written 8.3 years ago by ▴ 10
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