How to find chromosome coordinates based on gene locus
1
0
Entering edit mode
8.3 years ago
shome ▴ 10

I have full file comprising of list of gene locus.How can I find corresponding chromosome coordinates for each entry ?Is there any program or command(for example,using ncbi utilities) for the task?

For example,I have following data:

locus
AT1G01073
AT1G01115
AT1G01471
AT1G02320
AT1G02350
AT1G02391
AT1G02490
AT1G03022
AT1G03106
AT1G03200
AT1G03240
AT1G04171
AT1G04501

I need to find chromosome coordinates for all of them.

gene ncbi genome locus • 4.2k views
ADD COMMENT
2
Entering edit mode
8.3 years ago
satanicodr ▴ 160

Go to

http://www.ncbi.nlm.nih.gov/genome/proteins/4?genome_assembly_id=22492&gi=240254421

And look for the genes or download the annotation tables for all the chromosomes and then do a search on them,

ADD COMMENT

Login before adding your answer.

Traffic: 3000 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6