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1,000 results • Page
4 of 20
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4
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News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
8 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
366
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
8 months ago by
mia.nahom
▴ 10
0
votes
0
replies
327
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 8 months ago by
Ram
44k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
367
views
News:
Course - Reproducibility Data Analysis with R
R
renv
Version-Control
Reproducibility
updated 7 months ago by
Ram
44k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
458
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 8 months ago by
Ram
44k • written 8 months ago by
Sara
• 0
0
votes
0
replies
506
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 8 months ago by
Ram
44k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
398
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 8 months ago by
Ram
44k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
411
views
News:
Course. -Multivariate Data Analysis with R and vegan
R
vegan
MultivariateDataAnalysis
9 months ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
776
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
9 months ago by
PeterC_NCBI
▴ 410
1
vote
0
replies
316
views
News:
Course - Introduction to CRISPR
CRISPR
Evolution
GenomeEditing
9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
334
views
News:
Upcoming Learning Opportunities and Important Updates
R
Programming
aDNA
Paleogenomics
9 months ago by
carlopecoraro2
★ 2.5k
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
9 months ago by
Alexander
▴ 220
1
vote
0
replies
432
views
News:
Spatial Omics course
Spatial-Omics
Multiplexed-Image-Analysis
updated 7 months ago by
Ram
44k • written 9 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
474
views
News:
Generalized Additive Models in R
R
GAMs
Courses
9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
369
views
News:
NIAID Data Ecosystem Discovery Portal
databases
data
opendata
api
9 months ago by
ehaag
▴ 20
0
votes
0
replies
507
views
News:
Course - Structural Variant detection and comparison
SVs
Structural-Variants
updated 9 months ago by
Ram
44k • written 9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
391
views
News:
course -Developing R/Bioconductor Packages for Genomics
R
Genomics
Bioconductor
updated 9 months ago by
Ram
44k • written 9 months ago by
carlopecoraro2
★ 2.5k
4
votes
3
replies
1.1k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
9 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
405
views
News:
Course - Data Visualization in R with ggplot2
R
Data-Visualization
ggplot2
updated 9 months ago by
Ram
44k • written 9 months ago by
carlopecoraro2
★ 2.5k
38
votes
7
replies
2.3k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
10 months ago by
David Langenberger
11k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 10 months ago by
Ram
44k • written 2.7 years ago by
chen
★ 2.5k
0
votes
0
replies
499
views
News:
Course - RADseq data analysis with Stacks
RADseq
Phylogenomics
Stacks
Population-genomics
updated 9 months ago by
Ram
44k • written 10 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
444
views
News:
course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms
DNA-Methylation
BS-seq
updated 9 months ago by
Ram
44k • written 10 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
553
views
News:
Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
10 months ago by
Marcel Ribeiro-Dantas
▴ 470
0
votes
0
replies
456
views
News:
2-day Course on Introduction to Nextflow
Workflow
Reproducibility
Nextflow
updated 10 months ago by
Ram
44k • written 10 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
432
views
News:
Physalia courses in September
Genomics
R
Data-Science
updated 10 months ago by
Ram
44k • written 10 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
460
views
News:
Cellosaurus release 46
knowledgebase
cell-line
cellosaurus
10 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
347
views
News:
Course - Data Manipulation and Visualization in Python
Data-Manipulation
Data-Visualisation
Python
updated 11 months ago by
Ram
44k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
517
views
News:
Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
11 months ago by
sinha.shriprakash
▴ 20
0
votes
0
replies
515
views
News:
Course on Generalised Linear Mixed Models in R
GLMM
R
Statistics
Mixed-Models
updated 11 months ago by
Ram
44k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
469
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
R
Systems-Biology
Network-Analysis
Bioconductor
updated 9 months ago by
Ram
44k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
388
views
News:
course on Reproducibility data analysis with R
R
Reproducibility
Git
Github
11 months ago by
carlopecoraro2
★ 2.5k
38
votes
8
replies
1.7k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 11 months ago by
Alex Reynolds
35k • written 11 months ago by
David Langenberger
11k
4
votes
0
replies
665
views
News:
A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS
RNA-Seq
single-cell
workshop
11 months ago by
David Langenberger
11k
0
votes
0
replies
734
views
News:
Hands-On NGS Data Analysis Courses 2023
RNA-seq
DNA-seq
Workshop
updated 11 months ago by
Ram
44k • written 11 months ago by
David Langenberger
11k
1
vote
0
replies
515
views
News:
Course - Introduction to Deep Learning for biologists
Genomics
Deep-Learning
Python
NGS
updated 11 months ago by
Ram
44k • written 11 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
445
views
News:
Good bioinformatics training resources
NGS
updated 11 months ago by
Pierre Lindenbaum
162k • written 11 months ago by
ManuelDB
▴ 80
0
votes
0
replies
562
views
News:
Generalized Linear Models (GLM) course in R
R
GLM
statistics
11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
483
views
News:
course - Advanced Python programming
Python
Deep-Learning
Machine-Learning
updated 9 months ago by
Ram
44k • written 12 months ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
702
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
12 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
431
views
News:
Virtual Genome Annotation Workshop
annotation
genome
workshop
12 months ago by
mia.nahom
▴ 10
0
votes
0
replies
716
views
News:
Course - Longitudinal data analysis in R
Longitudinal-Data
R
Genomics
updated 12 months ago by
Ram
44k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
426
views
News:
New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST
BLAST.
NCBI
12 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
395
views
News:
Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics
CRISPR
12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
GWAS course
GWAS
R
updated 12 months ago by
Ram
44k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
505
views
News:
Course - RNAseq data analysis with R/Bioconductor
R
Tidyverse
RNA-seq
Bioconductor
updated 9 months ago by
Ram
44k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
454
views
News:
Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis
Spatial-Omics
updated 12 months ago by
Ram
44k • written 12 months ago by
carlopecoraro2
★ 2.5k
3
votes
3
replies
1.2k
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
12 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
398
views
News:
course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing
Population-Genomics
updated 12 months ago by
Ram
44k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
398
views
News:
PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming
Training
R
12 months ago by
carlopecoraro2
★ 2.5k
1,000 results • Page
4 of 20
Recent Votes
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
Comment: Trouble with PLINK's logistic regression analysis and covariatesTrouble with PLI
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
The Biostar Herald for Monday, May 20, 2024
Answer: plink2 cannot make bed file
Answer: plink2 cannot make bed file
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Comment: Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files
by
Deepthi
• 0
I unzipped the fastq files to check whether reads are trimmed adapter or not. I have checked the quality control using fastqc they are go…
Comment: Mutation counts corrected by number of samples
by
Ram
44k
> I want to compare the number of mutations This comparison will give you literally no useful information.
Answer: How to scrape BioMart data from https://sorfs.ugent.be/ website
by
Pierre Lindenbaum
162k
something like: seq 1 100 4377380 | while read F ; do wget --no-check-certificate -O - "https://sorfs.ugent.be/database/micrope…
Answer: Harmony integration group.by.var parameter
by
jared.andrews07
★ 17k
The variability explained by the variables provided to `group.by.vars` is what Harmony will try to remove. Assuming you want to remove the …
Answer: Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
by
Jeremy Leipzig
22k
That SNP is in an HLA gene which has had a lot of attention and improvement over the years, ranging from kits to software to the reference …
Comment: Overlapping clusters for different biological conditions: Seurat, UMAP
by
Bastien Hervé
5.3k
What is the need of PBMC in your analysis ? If none, removing them from the beginning will allow your clusters to be more specific to your …
Answer: How to calculate cell type frequency between two groups in single cell data
by
Bastien Hervé
5.3k
I believe `sample_id` are your replicates in either `patient` or `control`. You can do it manually by normalizing the number of cells yo…
Answer: bfctools merge [E::hts_open_format] Failed to open file
by
j.f.akers
• 0
I think the program is trying to open a .vcf.gz.csi file rather than the actual data which is the .vcf.gz file, the csi file is not data, j…
Comment: LDhat lookup table
by
NÚRIA
• 0
Hi! Did you manage to fix this? I run convert successfully on 60 unphased diploid samples (1500bp), hence I used lktable available in LDh…
Comment: Trouble with PLINK's logistic regression analysis and covariatesTrouble with PLI
by
F110152169
• 0
It's Parkinson's disease. How do I get the right order?
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
by
QX
• 0
yes but they did not reply
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
fracarb8
★ 1.7k
Looking at both `nCount` and `MT` the profile are cut at your thresholds, suggesting that you simply don't have cells with >2000(ish) genes…
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
by
Pierre Lindenbaum
162k
did you ask the authors to restore their server ?
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
sc_analysis
• 0
Yes. But after applying: merged_seurat_objects_filtered <- subset(x = merged_seurat_objects, subset = nFeature_RNA > 200 & nFeature_R…
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
by
fracarb8
★ 1.7k
This [paper][1] provides a comparison of the three methods in different settings. [1]: https://genomebiology.biomedcentral.com/articles…
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