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News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 19 months ago by 44k • written 8.8 years ago by ▴ 80
8
votes
10
replies
4.1k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
8
votes
0
replies
1.8k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 13 months ago by 44k • written 7.2 years ago by 11k
8
votes
4
replies
2.0k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 11 months ago by 44k • written 4.7 years ago by ★ 2.4k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 12 months ago by 44k • written 6.5 years ago by ▴ 70
8
votes
2
replies
859
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
6 weeks ago by David Langenberger 11k
8
votes
8
replies
3.0k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 11 months ago by 44k • written 4.2 years ago by 100k
8
votes
0
replies
2.5k
views
News: De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly Workshop DNA-Seq
updated 20 months ago by 44k • written 8.6 years ago by 11k
8
votes
1
reply
2.7k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 15 months ago by 44k • written 10.8 years ago by 11k
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 12 months ago by 44k • written 5.6 years ago by 100k
8
votes
2
replies
911
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 14 months ago by 44k • written 4.4 years ago by 11k
8
votes
0
replies
2.2k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 15 months ago by 44k • written 11.7 years ago by 100k
8
votes
2
replies
2.4k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 12 months ago by 44k • written 7.1 years ago by ▴ 120
8
votes
1
reply
1.8k
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 2.3 years ago by ★ 27k • written 2.3 years ago by 142k
8
votes
1
reply
3.4k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 14 months ago by 44k • written 9.6 years ago by 11k
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 15 months ago by 44k • written 11.3 years ago by 11k
8
votes
0
replies
1.3k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 11 months ago by 44k • written 4.9 years ago by 11k
8
votes
0
replies
2.8k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 15 months ago by 44k • written 11.2 years ago by 9.7k
8
votes
0
replies
1.9k
views
News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 2.1 years ago by 44k • written 9.2 years ago by ★ 2.4k
7
votes
0
replies
1.5k
views
News: First PacBio Sequel data available
pacbio sequel
updated 13 months ago by 44k • written 7.7 years ago by 142k
7
votes
2
replies
2.3k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 13 months ago by 44k • written 7.9 years ago by 11k
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 12 months ago by 44k • written 6.9 years ago by ★ 2.5k
7
votes
0
replies
2.9k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 13 months ago by 44k • written 7.9 years ago by ▴ 70
7
votes
11
replies
2.1k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 12 months ago by 44k • written 6.8 years ago by ▴ 100
7
votes
3
replies
1.9k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 3.1 years ago by 100k • written 3.1 years ago by ▴ 50
7
votes
2
replies
1.2k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
4 months ago by David Langenberger 11k
7
votes
8
replies
1.9k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 12 months ago by 44k • written 6.5 years ago by ▴ 690
7
votes
0
replies
2.0k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 13 months ago by 44k • written 7.7 years ago by ▴ 290
7
votes
2
replies
2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 21 months ago by 44k • written 8.4 years ago by ★ 2.4k
7
votes
3
replies
4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 14 months ago by 44k • written 10.5 years ago by ★ 1.2k
7
votes
1
reply
2.8k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.4k
7
votes
0
replies
3.2k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 21 months ago by 44k • written 10.3 years ago by 162k
7
votes
1
reply
3.1k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 14 months ago by 44k • written 10.3 years ago by 11k
7
votes
0
replies
1.8k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 15 months ago by 44k • written 11.6 years ago by 11k
7
votes
0
replies
1.0k
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 11 months ago by 44k • written 4.3 years ago by 142k
7
votes
8
replies
4.2k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 19 months ago by 44k • written 10.8 years ago by ▴ 610
7
votes
1
reply
692
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
2.0 years ago by kzkedzierska ▴ 290
7
votes
4
replies
2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 15 months ago by 44k • written 11.1 years ago by 11k
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 12 months ago by 44k • written 7.2 years ago by ★ 2.5k
6
votes
1
reply
1.1k
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 12 months ago by 44k • written 6.4 years ago by ★ 2.4k
6
votes
4
replies
1.7k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 13 months ago by 44k • written 8.2 years ago by 23k
6
votes
7
replies
4.3k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
6
votes
0
replies
1.5k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 12 months ago by 44k • written 6.8 years ago by ▴ 90
6
votes
4
replies
1.2k
views
News: Upcoming online training courses
Python R
2.8 years ago by carlopecoraro2 ★ 2.5k
6
votes
0
replies
2.3k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 12 months ago by 44k • written 5.2 years ago by 23k
6
votes
0
replies
581
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
2.1 years ago by kzkedzierska ▴ 290
6
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 12 months ago by 44k • written 6.9 years ago by 11k
6
votes
0
replies
2.8k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 15 months ago by 44k • written 11.4 years ago by ★ 5.3k
6
votes
0
replies
1.9k
views
News: Bioinformatics Contest 2017
contest
updated 13 months ago by 44k • written 7.3 years ago by ▴ 70
6
votes
4
replies
1.3k
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 11 months ago by 44k • written 4.1 years ago by ★ 2.5k
1,000 results • Page 3 of 20
Recent Votes
A: Fold change - a final explanation
Comment: scRNA-seq quality control
Comment: How to get the ratio of allele counts from GATK derived VCF file?
Setting up Aspera Connect (ascp) on Linux and macOS
Setting up Aspera Connect (ascp) on Linux and macOS
Answer: Genes' fpkm values through cufflink
Answer: Genes' fpkm values through cufflink
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Recent Replies
Answer: How do we do quantification using stringtie merge option for all the merged samp by i.sudbery 19k
If you are asking StringTie to estimate expression, then you need to provide it with BAM or CRAM files of the original reads, not a stringt…
Answer: How to interpret this plotMDS of three disease clusters? by i.sudbery 19k
> 1) How should I interpret this, can I say that there are practically no differences or outliers? You can say that the inter-group vari…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by emmanouil.a ▴ 120
personaly I see the workstations in long-term ... maybe today you are running only scRNA but having a good workstation tomorrow you can als…
Comment: Z score by Akash D ▴ 40
Alright! Got you...
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
It very much depends on whether the OP does want/need to do the CellRanger runs locally or not. Doesn't really matter if its only occasion…
Comment: log2 fold change in RNA-seq analysis by Mensur Dlakic ★ 27k
Everything is already explained on this page, just read everything already written above. Specifically, [**this comment**][1]. [1]: htt…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Good day everyone, Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
Answer: GWAS Phenotypes by 韩雨 • 0
In my opinion, the basis of the question is to solve whether the phenotype is regulated by genetics. In the aspect of genetic, the estima…
Answer: Classic threshold for log2 fold change in RNA-seq experiment by May Ling • 0
Good day everyone, Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
Comment: some error in building kraken2 database by ahmet • 0
Were you able to fix this issue? I'm also trying to add external species to krakendb
Comment: Z score by ATpoint 82k
logFCs are a bit difficult to cluster I think, because fold changes without stats attached to it are meaningless. They can be very big, due…
Comment: Z score by Akash D ▴ 40
Ok. However, if i perform it on log2FC, there wont be any control samples visible in my heatmap. Your answer is perfect.
Comment: Z score by ATpoint 82k
You can apply Z-scores on whatever you want, but it must make sense and depends on what you want to do. What is the context? See for exampl…
Answer: Z score in RNAseq by Akash D ▴ 40
Can Z score be applied on log2FC and then visualized? Alternatively, Can log2FC be converted to Z scores and then visualized as heatmap?
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by ATpoint 82k
Just for comparison, I deal with scRNA-seq daily and my workstation is a 12700k i7 with 128GB RAM and even this is actually more than I nee…
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