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731 results • Page
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4
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2
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1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Lars
★ 1.0k
1
vote
2
replies
1.7k
views
News:
NCBI Datasets - try it out!
Assembly
refseq
genome
ncbi
updated 11 months ago by
Ram
43k • written 4.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
2
replies
1.1k
views
News:
Training - Introduction to Deep Learning
Deep-Learning
Machine-Learning
Python-Programming
updated 11 months ago by
Ram
43k • written 3.8 years ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
707
views
News:
Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Emily
23k
3
votes
2
replies
732
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
7 weeks ago by
Johannes W. Dietrich
• 0
1
vote
2
replies
278
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 11 days ago by
Weiwen
• 0 • written 12 days ago by
MICOS
▴ 10
0
votes
2
replies
435
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
4 days ago by
David Langenberger
11k
5
votes
2
replies
1.7k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 11 months ago by
Ram
43k • written 5.8 years ago by
aln
▴ 320
1
vote
2
replies
770
views
News:
Ensembl reduced functionality, early March
ensembl
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Emily
23k
7
votes
2
replies
1.2k
views
News:
NGS Data Analysis Workshops 2024
scRNA-seq
dna-seq
rna-seq
nextflow
4 months ago by
David Langenberger
11k
1
vote
2
replies
2.4k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 12 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.1k
views
News:
Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research
software
updated 11 months ago by
Ram
43k • written 5.3 years ago by
duminda.aluthgamage
▴ 30
0
votes
2
replies
941
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 8 months ago by
Dave Carlson
★ 1.7k • written 8 months ago by
oliverhooker
▴ 110
6
votes
2
replies
1.1k
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by
Ram
43k • written 5.3 years ago by
Ben_Ensembl
★ 2.4k
3
votes
2
replies
1.0k
views
News:
BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing
RNA-seq
multi-omics
ngs
updated 11 months ago by
Ram
43k • written 5.4 years ago by
polina99
• 0
4
votes
2
replies
612
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
8 months ago by
PeterC_NCBI
▴ 410
12
votes
2
replies
514
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
5 weeks ago by
David Langenberger
11k
3
votes
2
replies
698
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
11 months ago by
PeterC_NCBI
▴ 410
5
votes
2
replies
932
views
News:
The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute
challenge
updated 11 months ago by
Ram
43k • written 4.8 years ago by
hollystephens723
▴ 70
1
vote
1
reply
232
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
IGB Helper
• 0
0
votes
1
reply
393
views
News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
682
views
News:
NGS & Microarray Custom Data Analysis Training Program
next-gen-sequencing
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 4.9 years ago by
guddi
• 0
0
votes
1
reply
344
views
News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
4 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
1.3k
views
News:
Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R
RNA-Seq
next-gen
ChIP-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
655
views
News:
International Conference on Renewable & Non-Renewable Energy
next-gen
updated 12 months ago by
Ram
43k • written 6.0 years ago by
energy
• 0
0
votes
1
reply
860
views
News:
FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
7 months ago by
David Langenberger
11k
3
votes
1
reply
845
views
News:
PrecisionFDA has won a FedHealth IT award!!
platform
cloud-based
precision-medicine
award
updated 11 months ago by
Ram
43k • written 5.0 years ago by
stephens_sarah
▴ 150
0
votes
1
reply
1.2k
views
News:
FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
RNA-Seq
scRNA-Seq
single-cell
7 months ago by
David Langenberger
11k
0
votes
1
reply
729
views
News:
Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning
Health-Informatics
updated 11 months ago by
Ram
43k • written 5.6 years ago by
lmanohara99
▴ 20
0
votes
1
reply
1.6k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 11 months ago by
Ram
43k • written 4.5 years ago by
David Langenberger
11k
0
votes
1
reply
2.4k
views
News:
Hands-on training in Bioinformatics and Biomedical Data Science
NGS
training
updated 11 months ago by
Ram
43k • written 5.6 years ago by
sahil
▴ 10
0
votes
1
reply
198
views
News:
Online NGS Training Program
next-gen-sequencing
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 4.9 years ago by
suvarna
• 0
0
votes
1
reply
989
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
3 months ago by
David Langenberger
11k
0
votes
1
reply
835
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS
Online-Workshop
updated 4 months ago by
Ram
43k • written 4 months ago by
David Langenberger
11k
0
votes
1
reply
1.2k
views
News:
Registration deadline: Comparative genomics
snp
SVs
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
480
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 7 months ago by
chrchang523
10k • written 7 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
1.4k
views
News:
Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS
DNA-seq
Workshop
updated 11 months ago by
Ram
43k • written 4.1 years ago by
David Langenberger
11k
0
votes
1
reply
793
views
News:
Advanced R Programming Course
R
updated 12 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
1.3k
views
News:
New International MScProgram: Data Science and Information Technologies (DSIT) from the University of Athens [New Application Deadline 6 Aug 18]
studies
data-science
updated 11 months ago by
Ram
43k • written 5.8 years ago by
IV
★ 1.3k
3
votes
1
reply
1.2k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Elisabeth Gasteiger
★ 2.4k
1
vote
1
reply
947
views
News:
Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection
webinar
RNA-Seq
gene-fusion
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Strand NGS
▴ 40
5
votes
1
reply
1.6k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
1.7k
views
News:
Meet Dr. Giovanni Marco Dall'Olio
NGS
training
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.2 years ago by
David Langenberger
11k
6
votes
1
reply
2.9k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 11 months ago by
Ram
43k • written 5.1 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
623
views
News:
Bioinformatics Training Program
next-gen-sequencing
genome
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.9 years ago by
guddi
• 0
1
vote
1
reply
1.7k
views
News:
2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq
Workshop
NGS
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.2 years ago by
David Langenberger
11k
0
votes
1
reply
1.1k
views
News:
Google Summer of Code 2020 announced for mentor organisations
internship
GSoC
updated 11 months ago by
Ram
43k • written 4.4 years ago by
Emily
23k
0
votes
1
reply
1.1k
views
News:
Help GIAB manually curate benchmark SVs!
giab
updated 12 months ago by
Ram
43k • written 6.0 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
1000
views
News:
Data visualization with Python
snp
next-gen
sequencing
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
635
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by
Ram
43k • written 7 months ago by
Rebecca
• 0
731 results • Page
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Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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ATpoint
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What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
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21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
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Gordon Smyth
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See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Our resul…
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Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
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Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
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i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
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Yes, `bedmap` will perform operations on one or two BED files.
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Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
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Ngrin
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Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
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This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
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@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
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hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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bk11
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You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
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ntsopoul
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I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
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There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
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