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378 results • Page
2 of 8
Sort: replies
Rank
Views
Votes
Replies
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 7 months ago by
Ram
43k • written 7 months ago by
kieran
▴ 10
30
votes
13
replies
3.7k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 11 months ago by
Ram
43k • written 9.7 years ago by
Medhat
9.7k
33
votes
12
replies
1.1k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
11 weeks ago by
karlaarz
▴ 110
12
votes
12
replies
3.0k
views
Forum:
Programming interview via Skype
programming-test
interview
updated 11 months ago by
Ram
43k • written 5.9 years ago by
padgaus
▴ 50
22
votes
12
replies
1.8k
views
6 follow
Forum:
What were the most impactful Bioinformatics papers published this year
papers
publications
updated 11 months ago by
Ram
43k • written 4.4 years ago by
c_u
▴ 520
4
votes
12
replies
1.5k
views
Forum:
publicly available data
arrayexpress
GEO
SRA
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Konstantinos Yeles
▴ 110
18
votes
12
replies
2.5k
views
6 follow
Forum:
why GATK makes things more complicated ?
genomics
updated 11 months ago by
Ram
43k • written 5.3 years ago by
Learner
▴ 280
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 11 months ago by
Ram
43k • written 4.1 years ago by
scolobs
• 0
23
votes
12
replies
2.0k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 11 months ago by
Ram
43k • written 3.9 years ago by
David Langenberger
11k
21
votes
12
replies
3.6k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
4 months ago by
Ram
43k
25
votes
11
replies
3.8k
views
6 follow
Forum:
Site Use Guidelines
meta
biostars
Guidelines
updated 24 days ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
9
votes
11
replies
3.3k
views
7 follow
Forum:
Fields with biggest demand for bioinformatics?
career
updated 11 months ago by
Ram
43k • written 5.3 years ago by
BioinformaticsLad
▴ 200
21
votes
11
replies
2.6k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 14 months ago by
bompipi95
▴ 150
22
votes
11
replies
3.4k
views
Forum:
ExpressionSet in the age of tidyverse
expressionset
R
bioconductor
updated 12 months ago by
Ram
43k • written 6.0 years ago by
igor
13k
23
votes
11
replies
2.1k
views
9 follow
Forum:
file and directory management best practices
file-management
updated 11 months ago by
Ram
43k • written 3.8 years ago by
nkinney06
▴ 140
14
votes
11
replies
6.8k
views
7 follow
Forum:
Do you need a deduplication tool for FASTQ data in fastp?
deduplication
fastp
updated 11 months ago by
Ram
43k • written 5.0 years ago by
chen
★ 2.5k
18
votes
11
replies
2.4k
views
8 follow
Forum:
Create a File format to store Variant
hgvs
json
variant
updated 11 months ago by
Ram
43k • written 5.9 years ago by
sacha
★ 2.4k
17
votes
11
replies
1.0k
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
15
votes
11
replies
4.8k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 12 months ago by
Ram
43k • written 2.2 years ago by
mark.ziemann
★ 1.9k
21
votes
11
replies
2.0k
views
Forum:
Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
13
votes
11
replies
4.8k
views
Forum:
Anyone using Ubuntu on Windows (WSL)?
ubuntu
wsl
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Batu
▴ 250
16
votes
10
replies
1.2k
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 7 weeks ago by
Madelaine Gogol
5.3k • written 7 weeks ago by
Ann
★ 2.4k
9
votes
10
replies
1.3k
views
6 follow
Forum:
What's more clear, loops or functions?
R
updated 11 months ago by
Ram
43k • written 5.6 years ago by
DriesB
▴ 110
15
votes
10
replies
2.4k
views
6 follow
Forum:
help identifying bioinformatics operations tools
database
next-gen
operations
genomics
updated 11 months ago by
Ram
43k • written 5.5 years ago by
jsmedmar
▴ 80
7
votes
10
replies
1.8k
views
Forum:
Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by
Ram
43k • written 5.7 years ago by
SeYu
• 0
9
votes
10
replies
17k
views
8 follow
Forum:
Open Source Bioinformatics projects for beginners
Open-Source
Beginners
updated 3 months ago by
Saransh
• 0 • written 6.3 years ago by
Eugenia84
▴ 40
2
votes
10
replies
1.3k
views
Forum:
AddHealth Omics Data Source
AddHealthOmics
updated 11 months ago by
Ram
43k • written 5.5 years ago by
belevitt
• 0
14
votes
10
replies
2.2k
views
Forum:
WGBS alignment with BitMapperBS
BitMapperBS
bismark
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Shicheng Guo
★ 9.4k
9
votes
10
replies
1.7k
views
Forum:
Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences
data-analysis
updated 12 months ago by
Ram
43k • written 6.1 years ago by
lessismore
★ 1.3k
19
votes
10
replies
1.6k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
Sasha
▴ 850
7
votes
9
replies
1.1k
views
Forum:
DEG analysis when not replicates are available
NOISeq
RNA-Seq
edgeR
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Antonio R. Franco
★ 5.1k
14
votes
9
replies
5.0k
views
8 follow
Forum:
MD into bioinformatics
MD
career
updated 11 months ago by
Ram
43k • written 5.4 years ago by
elina_beleva
▴ 30
1
vote
9
replies
1.7k
views
Forum:
Care to speculate? Are Protein Fragments or Entire Protein Sequences useful when classifying via Machine Learning techniques
protein
Machine-Learning
classification
updated 11 months ago by
Ram
43k • written 5.3 years ago by
mcc
▴ 80
15
votes
9
replies
2.2k
views
6 follow
Forum:
[Opinion] - What alignment software do you use?
next-gen
alignment
updated 12 months ago by
Ram
43k • written 6.1 years ago by
Andrew_MacGregor
▴ 30
19
votes
9
replies
3.7k
views
Forum:
How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for working with real life genomics data?
R
genome
RNA-Seq
Python
updated 11 months ago by
Ram
43k • written 5.8 years ago by
WUSCHEL
▴ 760
2
votes
9
replies
1.4k
views
Forum:
Any good idea for bioinfo final presentation?
R
updated 11 months ago by
Ram
43k • written 4.0 years ago by
anran04100
• 0
2
votes
9
replies
1.4k
views
Forum:
'No code' data manipulation tools for bioinformatics
software
updated 11 months ago by
Ram
43k • written 3.9 years ago by
andy
• 0
11
votes
9
replies
2.3k
views
Forum:
Survey: help define Gencode and NCBI primary transcripts
refseq
ensembl
gencode
ncbi
transcript
updated 12 months ago by
Ram
43k • written 6.1 years ago by
Emily
23k
11
votes
9
replies
2.5k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 12 months ago by
Ram
43k • written 4.4 years ago by
ATpoint
82k
8
votes
9
replies
3.7k
views
8 follow
Forum:
How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Chen Sun
★ 1.1k
2
votes
9
replies
1.2k
views
Forum:
open source projects looking for contributors
open-source
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
claudiofr
▴ 20
7
votes
9
replies
1.5k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
6 months ago by
UT_FAN
▴ 40
7
votes
9
replies
1.6k
views
Forum:
10 Most important topic in Human evolutionary genomics
evolutionary-genomics
evolutionary-medicine
updated 11 months ago by
Ram
43k • written 5.1 years ago by
aloke205
▴ 40
2
votes
8
replies
1.7k
views
7 follow
Forum:
Which tools do you miss?
software
updated 11 months ago by
Ram
43k • written 3.8 years ago by
ete
▴ 110
16
votes
8
replies
2.1k
views
8 follow
Forum:
What are the most important unresolved problems in Bioinformatics?
bioinformatics
updated 10 months ago by
Ram
43k • written 7.6 years ago by
chen
★ 2.5k
3
votes
8
replies
3.5k
views
6 follow
Forum:
SSD or HHD for genome analysis
hardware
genome
sequencing
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Neil
▴ 20
7
votes
8
replies
784
views
Forum:
Bioinformatics career transition
career
forum
updated 9 weeks ago by
jared.andrews07
★ 16k • written 9 weeks ago by
jevill17
▴ 20
7
votes
8
replies
2.0k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
11 months ago by
K
• 0
34
votes
8
replies
2.7k
views
9 follow
Forum:
Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv
industry
career
updated 11 months ago by
Ram
43k • written 4.6 years ago by
'
▴ 300
7
votes
8
replies
1.3k
views
Forum:
Guidelines / Limits for Shared Bioinformatics Support
Core
Shared-Resources
Collaboration
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Charles Warden
8.2k
378 results • Page
2 of 8
Recent Votes
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
How can I perform Differential expression analysis with just one control and one cancer sample?
Comment: scRNAseq Differential expression analysis
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Recent Replies
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Our resul…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot
by
bk11
★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool
by
ntsopoul
▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool
by
GenoMax
142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
bk11
★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs
by
dthorbur
★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
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