Meaning of read color on IGV

Does anyone can help explain what it means by the different colors of highlighted reads? Thanks

Reads on IGV

igv

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updated 4.2 years ago by Pierre Lindenbaum

• written 4.2 years ago by yliueagle

1 answer

Coloring of Mapped Paired Reads in https://software.broadinstitute.org/software/igv/AlignmentData

https://software.broadinstitute.org/software/igv/interpreting_insert_size

https://software.broadinstitute.org/software/igv/interpreting_pair_orientations

https://software.broadinstitute.org/software/igv/interpreting_bisulfite_mode

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written 4.2 years ago by Pierre Lindenbaum

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