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lintonf
lintonf
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Joined:
6.5 years ago
Last seen:
5 months ago
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United States
Latest posts by user
0 votes
1 reply
1.0K views
calculating coverage of gene in my metagenomes with samtools
samtools depth metagenome coverage
updated by Pierre Lindenbaum Pierre Lindenbaum • written by lintonf • lintonf
0 votes
0 replies
746 views
mosdepth coverage & transcripts per million
tpm coverage metagenome mosdepth
written by lintonf • lintonf
0 votes
0 replies
854 views
Combine gene annotations (from metagenomes) & gene coverage information into single file
coverage kofamscan metagenome annotation functional mosdepth
written by lintonf • lintonf
0 votes
0 replies
0 views
Comment: Comment: bbcms vs bbnorm when working with highly uneven coverage
written by lintonf • lintonf
0 votes
1 reply
3.0K views
High % of reads lost to chimera filtering in DADA2
16s amplicon dada2 chimeras sequencing
updated by h.mon h.mon • written by lintonf • lintonf
0 votes
0 replies
0 views
Comment: Comment: High % Reads w/ Nextera Transposase Adapter
written by lintonf • lintonf
0 votes
2 replies
1.8K views
High % Reads w/ Nextera Transposase Adapter
transposase amplicon adapter nextera sequencing
written by lintonf • lintonf
0 votes
1 reply
0 views
Comment: C: bbduk truncated fastq file according to FastQC - help?
written by lintonf • lintonf
0 votes
3 replies
2.9K views
bbduk truncated fastq file according to FastQC - help?
bbduk metagenome pe fastqc
updated by swbarnes2 swbarnes2 • written by lintonf • lintonf
0 votes
1 reply
0 views
Comment: C: Losing most PE reads using Cutadapt on 150bp PE metagenomes
written by lintonf • lintonf
0 votes
4 replies
2.2K views
Losing most PE reads using Cutadapt on 150bp PE metagenomes
metagenome cutadapt pairedend pe shotgun
updated by h.mon h.mon • written by lintonf • lintonf
0 votes
3 replies
2.6K views
Should I merge, then trim PE reads before multiple sequence alignment?
amplicon alignment msa its1
updated by Ram Ram • written by lintonf • lintonf
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