This is a test version of Biostars. For the public version, visit https://www.biostars.org.
lintonf
lintonf
Reputation:
0 (New)
Joined:
6.8 years ago
Last seen:
8 months ago
Location:
United States
Latest posts by user
0 votes
1 reply
1.1K views
calculating coverage of gene in my metagenomes with samtools
samtools depth metagenome coverage
updated by Pierre Lindenbaum 17K • | written by lintonf 0
0 votes
0 replies
778 views
mosdepth coverage & transcripts per million
tpm coverage metagenome mosdepth
written by lintonf 0
0 votes
0 replies
887 views
Combine gene annotations (from metagenomes) & gene coverage information into single file
coverage kofamscan metagenome annotation functional mosdepth
written by lintonf 0
0 votes
0 replies
0 views
Comment: Comment: bbcms vs bbnorm when working with highly uneven coverage
written by lintonf 0
0 votes
1 reply
3.1K views
High % of reads lost to chimera filtering in DADA2
16s amplicon dada2 chimeras sequencing
updated by h.mon 3.5K • | written by lintonf 0
0 votes
0 replies
0 views
Comment: Comment: High % Reads w/ Nextera Transposase Adapter
written by lintonf 0
0 votes
2 replies
1.8K views
High % Reads w/ Nextera Transposase Adapter
transposase amplicon adapter nextera sequencing
written by lintonf 0
0 votes
1 reply
0 views
Comment: C: bbduk truncated fastq file according to FastQC - help?
written by lintonf 0
0 votes
3 replies
3.0K views
bbduk truncated fastq file according to FastQC - help?
bbduk metagenome pe fastqc
updated by swbarnes2 1.5K • | written by lintonf 0
0 votes
1 reply
0 views
Comment: C: Losing most PE reads using Cutadapt on 150bp PE metagenomes
written by lintonf 0
0 votes
4 replies
2.3K views
Losing most PE reads using Cutadapt on 150bp PE metagenomes
metagenome cutadapt pairedend pe shotgun
updated by h.mon 3.5K • | written by lintonf 0
0 votes
3 replies
2.7K views
Should I merge, then trim PE reads before multiple sequence alignment?
amplicon alignment msa its1
updated by Ram 4.5K • | written by lintonf 0
Latest awards to user
TODO: Awards