What does the black lines mean in the IGV track
2 answers
Hi. They are this.
Found it on --> https://software.broadinstitute.org/software/igv/AlignmentData
Downsampled reads areas are marked with a black rectangle just under the coverage track. The coverage track represents coverage for all the reads.
If you wanna get rid of the, go to preferences and turn off downsampling.
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link
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morovatunc
https://software.broadinstitute.org/software/igv/ToolBar
Shows/hides a vertical ruler line that follows the cursor in the data panels.
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link
written
by
Pierre Lindenbaum
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looks like a rendering glitch maybe? sometimes insertions are shown in that area (purple triangles)