More posts like this
-
Worrisome dispersion plot interpretation (DESeq2)
written by IrK 10Hi, I need some help interpreting a dispersion plot—specifically, what the estimated genes in the top‑right corner represent. Are those points outliers? Also, what exactly …
-
How to interpret Eigengene dendrongram results
written by nuorain 4Hi, How to interpret the attached Eigengene Dendrogram? What does the vertical bar (from 0 to 1) mean? Thank you very much. Best regards, J …
-
Understanding IGV
written by zizigolu 438Hi I have targeted sequencing (WGS) I have uploaded bam and vcf file for sample; From these screenshot which one shows/support this mutation ![enter image …
-
IGV read color ,what is inferred insert size and expected insert size mean?
written by Tao 4why this read pair is red in IGV? I see the IGV doc,read pair marked in red means inferred insert size will be larger than …
-
how to costum the color palette for ggplot2
written by Qianjiang(QJ) Hu 1Hi, I use the following code to get the heatmap (figureA): **My code:** ![enter image description here][1] **Figure A** ![enter image description here][2] However, I …
-
Interpreting SnpEff output plots
written by Alireza 3Hi all. How can we interpret the following bar plot? Why are two exon bars shown in the bar plot? ![enter image description here][1] ![enter …
-
IGV coverage bar has color, but no mutation?
written by chrisgr 2I attached a screenshot of an IGV output, what could be the reason(s) for the coverage bar to havea color but no mutation was detected? …
-
basal group in phylogenetic tree?
written by hojoun 0![enter image description here][1] [1]: /media/images/e2cb3ebf-76d2-4e03-8878-6a5f7450 Can the taxon in red bar be referred to as a basal taxon?
-
Show genome coverage in IGV-browser
written by kirillkirilenko 4Hi everyone! I have a genome *.fa* file and a *.bed* file showing repetitive elements in this genome. I want to visualize these files in …
-
What does the black lines mean in the IGV track
written by yliueagle 29I am wondering what do the pieces of black lines between the coverage and reads mean? Thanks if anybody knows ![enter image description here][1] [1]: …