CARD(The Comprehensive Antibiotic Resistance Database) installation
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Antimicrobial resistance Genome batch analysis
written by Mup123 •Hi, If we have 100 bacterial whole genome sequences for analyzing antimicrobial resistance genes and what is the best tool to do batch analysis. (I …
-
KEGG antimicrobial resistance signatures from GhostKOALA
written by provira •Hello everybody! I need some conceptual guidance to better understand my results. I am looking for antibiotic resistance (ARGs) genes in shotgun metagenomic reads. I …
-
How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?
written by ramin.k2013 •I have a gene abundance table for my metagenomics data. I want to just extract antibiotic resistant genes from the table and analyze them separately. …
-
How to create proteins of interest reference file for antibiotic resistant genes analysis?
written by ramin.k2013 •I want to explore the antibiotic resistant genes profile in my data using the [ShortBRED][1] pipeline. The pipeline requires two input files in the first …
-
Link between CARD and PubChem?
written by August •In [CARD][1], I want to use the ID of a [resistance gene(e.g. AAC(6')-31, Accession: ARO:3002585)][2] to find its related [antibiotic's structure file][3]. In the [paper][4], …
-
Access Denied to CARD antibiotic data base
written by sltulasi •Hi, I am getting the following message : Your computer's IP address has been blocked from accessing the Comprehensive Antibiotic Resistance Database (card.mcmaster.ca). Please contact …
-
How to find the number of copies of genes (e.g. 23S rRNA) present in a genome?
written by eli_bayat •Hello, I am in the process of collecting Antimicrobial resistance reference data and metadata. I have 2 questions and will appreciate any help. 1. Where …
-
Using different tools for different database sequences to identify antibiotic resistance genes.
written by dymphan.17phd •I have obtained nucleotide and protein genes using PRODIGAL tool from assembled contigs in a illumina sequenced metagenomic sample. I need to search against three …
-
Mapping metagenome information to amplicon sequences
written by LRStarHello all, I have a set of amplicon sequences for antimicrobial resistance determinants. Each amplicon sequence varies in length between 125 and 275 bp. I …
-
What are some bioinformatics studies that have been done looking at antimicrobial resistance?
written by newbio17I have seen multiple papers that focus on microbiology and chemistry aspect of antimicrobial resistance, and have yet to find one that involves more bioinformatics. …
What have you tried? A simple search leads to: https://card.mcmaster.ca/download
Thank you.
A tutorial for the installation and analysis can be found here
Thank you.