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11
votes
6
replies
20k
views
6 follow
Remove cells from Seurat based on a list
scRNA-seq Seurat
updated 9 months ago by 43k • written 3.9 years ago by ▴ 250
1
vote
1
reply
2.1k
views
Seurat: (Box)plot unscaled gene expression of a list of genes by cluster
Seurat R cell single
updated 23 months ago by ★ 1.8k • written 23 months ago by ▴ 250
7
votes
4
replies
1.2k
views
How to distinguish INDELs from SNPs.
WGS WES
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 250
1
vote
0
replies
572
views
Pairwise batch correction in Monocle3
single cell correction batch Monocle3 trajectories
2.6 years ago by elb ▴ 250
4
votes
2
replies
987
views
Plot average expression instead of -Log10(FDR/p-val) in volcano plot
plot volcano expression gene
2.6 years ago by elb ▴ 250
1
vote
2
replies
707
views
Batch correction on scRNA-Seq data
scRNA-Seq
3.0 years ago by elb ▴ 250
6
votes
4
replies
1.6k
views
merge .fastq.gz files
RNA-seq
updated 3.1 years ago by 14k • written 3.1 years ago by ▴ 250
2
votes
3
replies
859
views
Combine two independent Seurat analysis into a single one
RNA-Seq seurat
updated 3.2 years ago by 43k • written 3.2 years ago by ▴ 250
7
votes
10
replies
1.2k
views
Forward and reverse single cell data analysis
RNA-Seq
updated 3.2 years ago by 14k • written 3.2 years ago by ▴ 250
8
votes
4
replies
4.7k
views
Normalization and batch effects correction in RNA-Seq data
RNA-Seq Combat
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 250
3
votes
2
replies
610
views
Survival time computation
survival
3.8 years ago by elb ▴ 250
2
votes
2
replies
695
views
Annotate a list of RefSeqIDs
genome
updated 4.0 years ago by 141k • written 4.0 years ago by ▴ 250
2
votes
4
replies
1.1k
views
Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
ChIP-Seq
4.0 years ago by elb ▴ 250
2
votes
4
replies
1.4k
views
Get the count.matrix from Chip-Seq BAM files
ChIP-Seq
updated 4.0 years ago by 82k • written 4.0 years ago by ▴ 250
3
votes
2
replies
1.0k
views
Looping bedtools multicov on paired bam and bed files
ChIP-Seq bedtools
updated 4.0 years ago by 82k • written 4.0 years ago by ▴ 250
2
votes
5
replies
3.8k
views
Filtering the genes based on cpm in edgeR
RNA-Seq edgeR
4.1 years ago by elb ▴ 250
3
votes
4
replies
2.8k
views
Extract quality scores from aligned BAM files
ChIP-Seq
4.1 years ago by elb ▴ 250
3
votes
5
replies
2.1k
views
Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
RNA-Seq scRNA-Seq sequencing
updated 4.3 years ago by 141k • written 4.3 years ago by ▴ 250
1
vote
0
replies
816
views
chromHMM segmented genome annotation for genes
ChIP-Seq
4.4 years ago by elb ▴ 250
4
votes
7
replies
2.6k
views
Chip-seq best practice data analysis
ChIP-Seq
updated 4.5 years ago by 82k • written 4.5 years ago by ▴ 250
0
votes
0
replies
584
views
segmentation of Chip-exo DATA
ChIP-Seq
updated 4.5 years ago by 141k • written 4.5 years ago by ▴ 250
10
votes
12
replies
1.6k
views
Variability explained by a core of genes
RNA-Seq gene expression threshold variability
updated 4.7 years ago by 87k • written 4.7 years ago by ▴ 250
2
votes
1
reply
665
views
Annotate counts region by region
ChIP-Seq bam
4.9 years ago by elb ▴ 250
5
votes
5
replies
2.6k
views
Illumina bead chip data normalisation
Illumina gene expression limma
updated 4.9 years ago by ▴ 20 • written 5.6 years ago by ▴ 250
2
votes
11
replies
1.6k
views
edgeR and design matrix with triplicates
edgeR R RNA-Seq
updated 4.9 years ago by 82k • written 4.9 years ago by ▴ 250
2
votes
1
reply
1.6k
views
Preranked GSEA statistics
gsea
updated 4.9 years ago by ▴ 920 • written 4.9 years ago by ▴ 250
2
votes
2
replies
2.3k
views
Statistical test for counts
statistical-test cell-counts
updated 11 months ago by 43k • written 6.0 years ago by ▴ 250
4
votes
1
reply
1.4k
views
LogFC calculation in multiple comparisons
rna-seq edgeR deseq
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 250
2
votes
1
reply
1.2k
views
On the practical use of estimateDisp function
RNA-Seq EDGEr
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 250
0
votes
5
replies
1.5k
views
Statistics on differentially expressed genes
RNA-Seq
5.1 years ago by elb ▴ 250
2
votes
9
replies
3.0k
views
differential gene expression analysis using log2(counts+1)
rna-seq R
5.4 years ago by elb ▴ 250
1
vote
0
replies
1.4k
views
Align two single cell experiments
R single-cell
updated 11 months ago by 43k • written 5.4 years ago by ▴ 250
11
votes
6
replies
8.3k
views
log transformation of rpkm
RNA-Seq
updated 5.5 years ago by 8.2k • written 5.5 years ago by ▴ 250
3
votes
3
replies
1.3k
views
Unsupervised selection of inter-cluster highly variable genes
R RNA-Seq variance
updated 11 months ago by 43k • written 5.5 years ago by ▴ 250
3
votes
0
replies
1.8k
views
Detection p-value Illumina beadchip
illumina beadchip GEO
5.5 years ago by elb ▴ 250
1
vote
2
replies
823
views
Independent groups normalisation
RNA-Seq normalization
updated 5.6 years ago by 47k • written 5.6 years ago by ▴ 250
3
votes
1
reply
1.7k
views
sva output interpretation
RNA-Seq sva
updated 5.6 years ago by 104k • written 5.6 years ago by ▴ 250
4
votes
1
reply
1.2k
views
Cross platform gene expression comparison and threshold choice
RNA-Seq Microarrays Gene Expression
updated 5.6 years ago by 104k • written 5.6 years ago by ▴ 250
4
votes
5
replies
2.5k
views
FeatureCounts on HG38
RNA-Seq star HG19 REFSEQ
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 250
10
votes
8
replies
2.9k
views
Merge .bam files by groups of lanes
bam samtools RNA-Seq
updated 5.8 years ago by 47k • written 5.8 years ago by ▴ 250
2
votes
3
replies
1.6k
views
RNA-Seq error in htseq-count
RNA-Seq next-gen sequencing
updated 5.8 years ago by 14k • written 5.8 years ago by ▴ 250
2
votes
2
replies
1.2k
views
Network inference analysis with small sample size
network sample size gene expression
updated 6.0 years ago by 141k • written 6.0 years ago by ▴ 250
1
vote
4
replies
1.8k
views
How to statistically compare multiple cell lines
qPCR R
updated 6.0 years ago by 104k • written 6.0 years ago by ▴ 250
3
votes
3
replies
3.6k
views
On the significance of the overlap between lists of genes
fisher test overlap significance
updated 6.1 years ago by ★ 1.1k • written 6.1 years ago by ▴ 250
3
votes
5
replies
3.0k
views
How to choose the threshold of co-expression for gene expression networks
gene expression networks threshold
updated 6.2 years ago by ▴ 50 • written 6.2 years ago by ▴ 250
8
votes
10
replies
1.7k
views
Looking for clinically validated anticancer drugs list
drugs cancer targets clinical human
updated 6.2 years ago by ★ 5.2k • written 6.2 years ago by ▴ 250
5
votes
2
replies
2.2k
views
regulatory regions discovery and alignment
ChIP-Seq genome sequence blast
updated 22 months ago by 43k • written 9.0 years ago by ▴ 250
11
votes
9
replies
11k
views
7 follow
Check For Co-Expressed Genes In Microarray Experiments
correlation clustering microarray gene
updated 3.1 years ago by 43k • written 11.5 years ago by ▴ 250
2
votes
2
replies
1.9k
views
Looking For A Summary Of Network Topological Properties
network graph
updated 11.4 years ago by 100k • written 11.4 years ago by ▴ 250
13
votes
8
replies
8.0k
views
Looking For Network Visualization Tools
network plot
updated 10 months ago by 43k • written 11.5 years ago by ▴ 250
52 results • Page 1 of 2
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