This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
194 views
Genome assembly from pooled individuals
pangenome plant genome genomics assembly
updated by colindaven colindaven • written by Anirmgls • Anirmgls
0 votes
6 replies
267 views
Forum: How do you decide if course feedback is actually trustworthy?
trainings ngs feedback workshops
updated by GenoMax GenoMax • written by ecSeq Bioinformatics • ecSeq Bioinformatics
1 vote
6 replies
3.1K views
Boltz1 structure prediction software installation
boltz1
updated by Matic Broz • Matic Broz • written by dsk129 • dsk129
0 votes
1 reply
649 views
Building a PC for BioML/ProteinDesign
protein-design machine-learning
updated by Matic Broz • Matic Broz • written by iloveproteins • iloveproteins
0 votes
1 reply
1.8K views
In molecular docking (autodock4), how to choose the best pose of docked state (from the clusters) for MD simulations?
autodock cluster
updated by Matic Broz • Matic Broz • written by cnrahul • cnrahul
0 votes
0 replies
74 views
Job: Computational Postdoctoral Fellow (Quantitative Modeling Group) at Berkeley Lab, Berkeley, CA
metabolomics bioinformatics bioengineering biomanufacturing
written by BerkeleyLab • BerkeleyLab
0 votes
2 replies
2.0K views
Problems separating and converting molecule files with openbabel
openbabel
updated by Matic Broz • Matic Broz • written by smithk • smithk
2 votes
0 replies
53 views
News: Developing R/Bioconductor Packages for Genomics - 27-31 July 2026
genomics bioconductor r packages
written by Physalia-courses Physalia-courses
1 vote
0 replies
62 views
Tool: Yet Another Boltz2 Server
folding protein pdb boltz2 alphafold
written by immunology_bishop • immunology_bishop
0 votes
2 replies
1.6K views
Problems in Molecular Docking in Autodock vina
atom boron autodock
updated by Matic Broz • Matic Broz • written by Nibedita • Nibedita
0 votes
4 replies
6.2K views
Simple Molecular Docking
docking molecular
updated by Matic Broz • Matic Broz • written by ericmajinglong ericmajinglong
0 votes
0 replies
70 views
News: RNA-Seq Analysis (RNAA02)
rna-seq
updated by GenoMax GenoMax • written by coursesinfo • coursesinfo
0 votes
2 replies
2.5K views
Trouble with Ligand-Protein Docking in AutoDock Vina: Shows an error when docked against a new set of ligands
docking protein-receptor ligand-protein-docking autodock-vina
updated by Matic Broz • Matic Broz • written by bandaru • bandaru
0 votes
8 replies
294 views
Forum: Recommendation for laptop in bioinformatic
recommendation laptop hardware
updated by Ram Ram • written by joe_mar02 • joe_mar02
0 votes
1 reply
1.2K views
AutoDock Vina Gives Different Results From Different Simulations Using Same Parameters, and Different From Experimental Results
screening vina docking virtual affinity binding autodock discovery drug
updated by Matic Broz • Matic Broz • written by ac.research • ac.research
0 votes
0 replies
51 views
Tool: ProteinIQ.io - browser-based bioinformatics tools for proteins, DNA, RNA, ligands, and structures
web bioinformatics free platform
written by Matic Broz • Matic Broz
0 votes
3 replies
272 views
Job: Expert review request: lac operon binding site annotations for a regulatory grammar-decoding project
binding-site gene-regulation transcription-factor e-coli annotation
updated by Michael Dondrup Michael Dondrup • written by Gary • Gary
0 votes
10 replies
2.8K views
Java -xmx option does not limit memory usage in the ImputePipelinePlugin?
phg phg
updated by rakesh • rakesh • written by twrl8 • twrl8
0 votes
0 replies
33 views
Tool: [Tool] spatial-cluster-compare — stop guessing which clustering algorithm to use on your spatial proteomics / cytometry data
python
written by mathis.bouvet • mathis.bouvet
56 votes
76 replies
73K views
How To Efficiently Parse A Huge Fastq File?
fastq next-gen-sequencing
updated by jena • jena • written by Panos Panos
0 votes
0 replies
65 views
News: CIBB 2026 — Three free pre-conference satellite events + Registration open (Rome, Sept 1-4)
bioinformatics machine-learning news single-cell biostatistics
written by Umberto • Umberto
0 votes
0 replies
34 views
Combining technical repeat with original for a clogged multiome sample?
multiome single cell
written by Artixiis • Artixiis
0 votes
0 replies
48 views
Housekeeping Genes for normalization or doublet detection in scRNA-seq and Spatial Transcriptomics
scrna-seq xenium spatial-transcriptomics housekeeping-genes normalization
written by npont • npont
0 votes
1 reply
128 views
1000 Genomes reference panels
panel reference
updated by Arup Ghosh Arup Ghosh • written by Shalini • Shalini
1 vote
0 replies
45 views
is someone using the "Strictly Standardized Mean Difference" (SSMD) analysis method?
ssmd
written by Francois Piumi • Francois Piumi
1 vote
13 replies
9.0K views
Small molecule databases
cheminformatics moleculescreening
updated by Shuai • Shuai • written by Sabine Sabine
0 votes
0 replies
65 views
Tool: ggwas: comprehensive ggplot2 toolkit for GWAS visualization (17 plot types, journal themes, smart downsampling
r ggplot2 manhattan-plot visualization gwas
written by Bartek • Bartek
0 votes
0 replies
41 views
Tool: macsima-qc – quantitative QC for automated cell segmentation (Isolation Forest + KS test)
segmentation python macsima maciqview
written by mathis.bouvet • mathis.bouvet
0 votes
0 replies
61 views
News: Large Language Models (LLMs) into your data anaylsis workflows using Python and R
python llms agenticai ai r
written by Physalia-courses Physalia-courses
0 votes
0 replies
55 views
Tool: Free Metappuccino server for SRA metadata collecting
sra llm metappuccino
written by immunology_bishop • immunology_bishop
0 votes
4 replies
342 views
Forum: Recommendation and Advice
beginner learning
updated by immunology_bishop • immunology_bishop • written by Sabina • Sabina
1 vote
8 replies
5.6K views
How to Detect Frameshifts in a Protein Alignment
frameshift mutation detection sequence alignment
updated by b.contreras.moreira • b.contreras.moreira • written by nickeener • nickeener
0 votes
20 replies
2.9K views
Poly-G Poly-C issues and Adapter Trimming
tails poly-c poly-g adapters
updated by GenoMax GenoMax • written by Jon • Jon
1 vote
1 reply
113 views
News: Machine Learning for Evolutionary Genomics (MLEG01)
machine-learning genomics
updated by Ram Ram • written by oliverhooker oliverhooker
0 votes
0 replies
43 views
News: Online course - AI in Drug Discovery
machinelearning drugdiscovery deeplearning gnns ai
written by Physalia-courses Physalia-courses
0 votes
0 replies
125 views
Job: Resident Academic Full-Time Post in Bioinformatics (University of Malta)
bioinformatics academia
written by jp jp
0 votes
4 replies
223 views
VCF sample id format for snpgdsVCF2GDS (SNPRelate package)
gds snprelate vcf
updated by Arup Ghosh Arup Ghosh • written by shpak.max • shpak.max
1 vote
1 reply
177 views
Permutation test for convergent gene expression changes
rna-seq randomization permutation
updated by kalavattam • kalavattam • written by Iulia • Iulia
0 votes
3 replies
308 views
Problems with biomaRt installation due to dplyr function "filter_out"
biomart dplyr bioconductor
updated by Arup Ghosh Arup Ghosh • written by shpak.max • shpak.max
0 votes
2 replies
206 views
How to find a list of all proteins involved in Alternative splicing regulation
alternative-splicing
updated by GenoMax GenoMax • written by mohammad.naweed • mohammad.naweed
2 votes
2 replies
162 views
Which key should I use with Harmony?
single cell harmony. rna sequencing
updated by opticlabsau.com • opticlabsau.com • written by bioinfo • bioinfo
2 votes
6 replies
410 views
Looking for help with molecular dynamics simulation of EEF1A2 D91N variant vs wild-type
protein eef1a2 simulation
updated by Michael Dondrup Michael Dondrup • written by fossy217 • fossy217
0 votes
0 replies
58 views
Running pySCENIC for disease vs. control comparison with isoform-level TF dysfunction
single-cell scenic pyscenic
written by qoop59 • qoop59
0 votes
5 replies
301 views
assemble_polyg_meta_v1.sh is removing most of my reads
bbmerge ecco shotgun polyfilter
written by GallopingAvocado • GallopingAvocado
0 votes
7 replies
430 views
Tool: I made an app that makes DNA files 40% smaller than CRAM , Spring
bam
updated by GenoMax GenoMax • written by Dan • Dan
1 vote
0 replies
47 views
Tool: VizModules: Flexible, Interactive R shiny Modules for Almost Any Plot
shiny visualization plotly r
written by jared.andrews07 jared.andrews07
2 votes
2 replies
194 views
Differential Expression Contrast Interpretation
differential dea contrasts drugs limma
updated by kalavattam • kalavattam • written by fnepo • fnepo
2 votes
0 replies
60 views
Tool: GO3, a Rust-powered Python library for Gene Ontology semantic similarity
bioinformatics rust python semantic go
written by Jose • Jose
0 votes
0 replies
80 views
News: (Workshop) - AI-Assisted Coding for Bioinformatics with Python – online, 1–2 July
python ai programming
written by Physalia-courses Physalia-courses
0 votes
0 replies
51 views
Tool: Free-text to HPO mapping with multilingual input support
variant bioinformatics hpo interpretation
updated by GenoMax GenoMax • written by sameer • sameer
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