Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
13,529 results • Page
2 of 271
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
235
views
Downloading older version of a tool
Alignment
tools
2 days ago by
Ruqaiya
• 0
0
votes
0
replies
144
views
Generating illumina interops SAV like plots for multiqc reports on HPC
visualization
illumina
ngs
sequencing
3 days ago by
rustykb
▴ 20
1
vote
1
reply
176
views
DSEQ2 analysis
DESEQ2
logfoldchange
updated 1 day ago by
Ram
43k • written 3 days ago by
adi.gershon1
• 0
3
votes
5
replies
266
views
Generating mpileup file using samtools
mpileup
samtools
updated 3 days ago by
Joe
21k • written 3 days ago by
Ruqaiya
• 0
0
votes
5
replies
340
views
6 follow
What purposes can TPM values be used for?
RNA-seq
TPM
Normalization
DESeq2
updated 3 days ago by
b.contreras.moreira
▴ 180 • written 3 days ago by
JH
• 0
1
vote
3
replies
279
views
Does comparing two different groups to a common third group introduce bias in the analysis?
DESEQ
RNAseq
updated 3 days ago by
ATpoint
82k • written 3 days ago by
Qi
• 0
0
votes
0
replies
135
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
3 days ago by
Amos Bairoch
▴ 120
2
votes
3
replies
273
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 2 days ago by
dthorbur
★ 1.9k • written 3 days ago by
Vijith
▴ 30
0
votes
0
replies
144
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
3 days ago by
Jeyong
• 0
0
votes
2
replies
727
views
homer not configured properly
Homer
makeTagDirectory
updated 3 days ago by
clairechung112
• 0 • written 23 months ago by
amahdi779
• 0
1
vote
3
replies
251
views
Bedtools merge minimum overlap?
bedtools
genomics
updated 3 days ago by
Alex Reynolds
35k • written 3 days ago by
SJP
• 0
0
votes
0
replies
131
views
Empty table plot using plotGseaTable()
FGSEA
2 days ago by
Chris
▴ 260
0
votes
1
reply
179
views
VG : No reference-sense paths available in the graph; falling back to generic paths.
vg
updated 3 days ago by
anovak
▴ 120 • written 3 days ago by
Hang
• 0
1
vote
3
replies
232
views
DiffBind: no peaks in DBA
MACS2
DiffBind
ChIP-seq
updated 3 days ago by
jared.andrews07
★ 16k • written 3 days ago by
yvonneh
▴ 10
3
votes
5
replies
308
views
Converting CRAM to FastQ
GATK
samtools
cram
SamToFastq
fastq
2 days ago by
Maverick
▴ 10
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 3 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
189
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
3 days ago by
dtnondorf
• 0
0
votes
1
reply
211
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 3 days ago by
Chris Dean
▴ 390 • written 3 days ago by
sovrappensiero
▴ 90
1
vote
2
replies
234
views
RNA-seq data for deep learning classification
rna-seq
3 days ago by
yahn
• 0
2
votes
7
replies
423
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
updated 1 day ago by
Zhenyu Zhang
★ 1.2k • written 3 days ago by
Qroid
▴ 40
0
votes
1
reply
509
views
Loss of 'var' using concatenation of AnnData objects
Scanpy
AnnData
updated 3 days ago by
Hugo
• 0 • written 4 months ago by
Rachel
• 0
0
votes
1
reply
148
views
Provean help
variant
Provean
updated 3 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
Arun Sai Kumar
• 0
1
vote
1
reply
162
views
Download eQTL data of one specific gene for all tissues from GTEx
eQTL
GTEx
updated 3 days ago by
bk11
★ 2.4k • written 4 days ago by
Jeol
▴ 20
1
vote
1
reply
170
views
Super ehancers
enhancers
updated 3 days ago by
jared.andrews07
★ 16k • written 4 days ago by
Oburah
• 0
0
votes
6
replies
288
views
How does gene length effect the number of reads mapped
RNA-seq
CPM
sequencing
updated 2 days ago by
dsull
★ 6.0k • written 3 days ago by
Chen
• 0
5
votes
5
replies
269
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA
DADA2
metabarcoding
updated 3 days ago by
atharvakarkare14
▴ 30 • written 4 days ago by
Begonia_pavonina
▴ 150
1
vote
7
replies
437
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
3 days ago by
eebloom
▴ 80
3
votes
3
replies
311
views
What analysis suitable to identify similarly expressed genes between two samples (treated vs untreated). Contrary to DGE analysis,
Gene-Expression
RNA
NOISeq
DGE
updated 3 days ago by
ATpoint
82k • written 4 days ago by
alifafiq1
• 0
0
votes
0
replies
99
views
Use of annotation of integrated Seurat object in single sample
Seurat
4 days ago by
Bine
▴ 60
0
votes
0
replies
105
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 3 days ago by
Ram
43k • written 4 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
222
views
Subsetting and merging back Seurat Object brings different results
Seurat
3 days ago by
Bine
▴ 60
0
votes
0
replies
136
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS
Genomics
Post-doc
R-loops
updated 3 days ago by
Ram
43k • written 4 days ago by
4r-rtg
• 0
1
vote
1
reply
138
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 3 days ago by
Ram
43k • written 4 days ago by
marco.barr
▴ 90
0
votes
0
replies
96
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
4 days ago by
Vijith
▴ 30
9
votes
10
replies
503
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 3 days ago by
Zamin Iqbal
▴ 20 • written 4 days ago by
nicole.kavanagh
• 0
0
votes
1
reply
275
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 4 days ago by
Scooter
▴ 280 • written 10 days ago by
avocado123
• 0
0
votes
0
replies
96
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
4 days ago by
James
▴ 10
0
votes
1
reply
585
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 4 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
234
views
Odd alignment question/finding
Alignment
updated 3 days ago by
barslmn
★ 2.1k • written 4 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
206
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 4 days ago by
GenoMax
142k • written 4 days ago by
mgranada3
▴ 30
0
votes
0
replies
98
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
4 days ago by
meck
• 0
0
votes
0
replies
124
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 4 days ago by
Ram
43k • written 4 days ago by
Oscar
▴ 10
0
votes
7
replies
545
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 3 days ago by
LChart
3.9k • written 6 days ago by
kl
▴ 10
0
votes
1
reply
220
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 4 days ago by
Adam
▴ 30 • written 5 days ago by
J
• 0
1
vote
3
replies
306
views
DESeq2 processing problems
deseq2
R
updated 4 days ago by
ATpoint
82k • written 5 days ago by
jagdish7921
• 0
0
votes
1
reply
781
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 3 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
0
votes
1
reply
151
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 4 days ago by
Ram
43k • written 4 days ago by
ernestine.kubi
• 0
0
votes
0
replies
106
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
4 days ago by
VITALA
• 0
1
vote
2
replies
250
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
4 days ago by
rianna.collins
• 0
0
votes
1
reply
183
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 5 days ago by
i.sudbery
19k • written 5 days ago by
Edmond
• 0
13,529 results • Page
2 of 271
Recent Votes
Comment: install.packages("imudata")
Answer: Can I merge Hi-C fastq files from different lanes?
Answer: Interpretation of output from MiXCR TCR sequencing
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
Answer: Association study using SNP data
.lgen file has 3+ different alleles
Recent Locations •
All
Munich,
1 minute ago
United States,
3 minutes ago
Colombia,
4 minutes ago
United Kingdom,
4 minutes ago
Russia,
5 minutes ago
Spain,
6 minutes ago
India,
9 minutes ago
Recent Awards •
All
Popular Question
to
sidrah.maryam
▴ 50
Popular Question
to
arshad1292
▴ 100
Popular Question
to
ahmad mousavi
▴ 800
Popular Question
to
njornet
▴ 20
Supporter
to
simplitia
▴ 130
Scholar
to
Pierre Lindenbaum
161k
Commentator
to
andres.firrincieli
3.6k
Recent Replies
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio
by
Ram
43k
Read the answers in the post, understand them and try to implement them.
Comment: High Malat-1 expression in single cell data
by
t.montserrat.ayuso
▴ 10
Just using the normalized expression of Malat1 works.
Comment: Can I merge Hi-C fastq files from different lanes?
by
Winter
• 0
Awesome, thank you for the concise and straight-forward answer!
Comment: error in R code
by
ATpoint
82k
Look, before you keep posting these sorts of questions and might gross of users, please read and follow https://www.biostars.org/p/357878/ …
Comment: Gene Specific coverage from WGS data
by
1769mkc
★ 1.2k
"Also if is there any other quick way to find gene specific coverage" can you give some example so that its bit more clear what do you mean…
Answer: Tissue-specific DEG analysis with DEseq2
by
ATpoint
82k
I assume that all data are from the same experiment, without batch effects and can thus be quantitiatively compared: Many ways to do thi…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio
by
snajafy
• 0
I am facing the same problem and I don't know how to solve the problem,....
Comment: install.packages("imudata")
by
zx8754
11k
[How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?](https://stackoverflow.com/q/25721884/680068)
Answer: install.packages("imudata")
by
ATpoint
82k
Welcome to this community. Please learn the most important lesson right away which is reading answers and learning from it. Users gave you …
Comment: install.packages("imudata")
by
marco.barr
▴ 90
You can install from github directly. Many R packages are not present in the CRAN repository or in Bioconductor( from Biocmanager). Also re…
Comment: install package
by
snajafy
• 0
Hi, Thanks for your answer, I do it, but I get this error: ERROR: compilation failed for package 'gmwm' removing 'C:/Users/najafi/AppData/…
Comment: Quetion regarding WGCNA
by
andres.firrincieli
3.6k
There is something wrong with your data but without any context I can't really answer to your question. I would like to see a PCA plot of …
Comment: error to run rnammer
by
antonio.spl
• 0
please could you tell me what was the solution, I am having the same problem, I only get empty files.
Comment: install package
by
snajafy
• 0
Hi, Thanks for your answer, I do it, but I get this error: ERROR: compilation failed for package 'gmwm' * removing 'C:/Users/najafi/AppData…
Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
swbarnes2
14k
Any chance the numerical columns were imported as factors?
Traffic: 2293 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6