Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
9 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
60
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
Pseudobulk
single-cell
DESeq2
scRNA
analysis
10 hours ago by
Sara
▴ 30
0
votes
0
replies
68
views
How to decrease the motif score?
scores
Motif
15 hours ago by
Hadia
• 0
0
votes
0
replies
64
views
immuCell Abundance infiltrate
ImmuCell
Abundance
infiltrate
updated 16 hours ago by
Pierre Lindenbaum
162k • written 16 hours ago by
elbakri.fatimazahrae
• 0
0
votes
1
reply
111
views
Setting a threshold on gene expression for subsetting (scRNA-seq)
scRNA-seq
updated 19 hours ago by
ATpoint
82k • written 22 hours ago by
carolofharvest
▴ 40
0
votes
0
replies
63
views
MaxEntScan for rMATS results
MaxEntScan
rMATS
19 hours ago by
adi.gershon1
• 0
2
votes
4
replies
259
views
Harmony integration group.by.var parameter
single-cell
harmony
17 hours ago by
Picasa
▴ 640
1
vote
3
replies
221
views
How to calculate cell type frequency between two groups in single cell data
Seurat
single-cell
sc-RNA
cell-type
updated 17 hours ago by
Bastien Hervé
5.3k • written 1 day ago by
Sara
▴ 30
1
vote
2
replies
299
views
Error when i use EVidenceModeler to do the genome annotation
EVidenceModeler
annotation
genome
20 hours ago by
peanut
• 0
1
vote
10
replies
3.5k
views
Merging multiple samples in Seurat
scRNA-seq
snRNA-seq
RNA-seq
Seurat
updated 10 hours ago by
Picasa
▴ 640 • written 7 months ago by
AFP3
• 0
9 results • Page
1 of 1
Recent Votes
Low DESeq2 Sensivity on scRNA Pseudobulk Samples
DESEQ2: How can I convert ensembl gene id's to HGNC gene names.
Problem with Ensembl version identifiers after running DESeq2
Issues with adding gene name and entrez ID to DESeq2 result having Ensembl ID.
A: Looking for differential gene expression between treatment, within a specific cl
How to compare cell-type ratios in sc-RNA seq data?
How to calculate cell type frequency between two groups in single cell data
Recent Locations •
All
Bologna,
5 minutes ago
USA,
12 minutes ago
Germany,
14 minutes ago
United States,
15 minutes ago
United States,
28 minutes ago
Australia,
30 minutes ago
Finland,
36 minutes ago
Recent Awards •
All
Popular Question
to
wonde2000
• 0
Teacher
to
alanh
▴ 170
Popular Question
to
Pegasus
▴ 100
Teacher
to
Rob
6.6k
Popular Question
to
seta
★ 1.9k
Popular Question
to
melissachua90
▴ 70
Popular Question
to
Hamtaro
▴ 50
Recent Replies
Comment: Merging multiple samples in Seurat
by
Picasa
▴ 640
did you split by sample or donor ?
Comment: Harmony integration group.by.var parameter
by
Picasa
▴ 640
For downstream analysis, after integration, my plan is to annotate each cluster/cell type and then perform a DGE analysis of KO versus WT f…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Bastien Hervé
5.3k
That is correct
Answer: Setting a threshold on gene expression for subsetting (scRNA-seq)
by
ATpoint
82k
That depends on the data and the marker. Generally I would plot violins per cluster for the marker(s) and see whether one robustly overexpr…
Comment: Error when i use EVidenceModeler to do the genome annotation
by
peanut
• 0
thank you so much ,i get it
Comment: Number of non-ATCG nucleotides replaced by Salmon
by
Tonya S.
▴ 10
Oops, yes, that must be where they are coming from. For some reason, I was thinking the genome was just soft-masked. How embarrassing! Than…
Answer: Number of non-ATCG nucleotides replaced by Salmon
by
Rob
6.6k
If there are no other signs that anything is awry, I probably wouldn't worry about this. Is it possible that these non-canonical nucleotid…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
I examined nine 10B runs and five 25B runs (we just started getting 25B flowcells a few months ago). I did not pay close attention but it …
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
GenoMax
142k
> I don't know how widespread these issues are outside of JGI. Very few small/medium sequencing centers likely have NovaSeq X. This is the…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
Supporting figures, taken from some slides I prepared for internal use. HDist 0, 1, and 2 correspond to 0, 1, and 2 mismatches allowed in …
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
This works. Thank you so so much!
Comment: Harmony integration group.by.var parameter
by
jared.andrews07
★ 17k
>I am not sure, but using "Sample_ID" might remove the differences between the conditions right ? More than likely, it'd at least impact t…
Comment: Harmony integration group.by.var parameter
by
Picasa
▴ 640
Thanks jared.andrews07 for your answer. So, you are suggesting to use only "Donor" in the integration? ```r RunHarmony(seu_obj, group.by.…
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
sc_analysis
• 0
I am not sure what should be the cut off. Looking at the vlnplot before subsetting i thought most of the cells are falling under 7500 nfeat…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Sara
▴ 30
Thank you for your comment and sorry if this question might be so basic. How can I normalize the number of cells? If I am not wrong the i…
Traffic: 1416 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6