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Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam)
Download some reference panel data in Plink format (R.bed, R.bim, R.f…
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did you ever figure it out? i'm having the same issue.
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Fixed the issue by updating nucmer version.
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Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
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you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
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One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
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See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
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Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
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Thank you so much for your response . Really appreciate it.
I will try the way you mentioned and will get back if I have any query
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Yes, `bedmap` will perform operations on one or two BED files.
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Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
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Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
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