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0
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0
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704
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Comment:
Comment: How to compare the quality of assemblies
17 days ago by
kirillkirilenko
▴ 40
5
votes
4
replies
704
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
17 days ago by
kirillkirilenko
▴ 40
0
votes
1
reply
462
views
Obtain satellite DNA monomer from dot plot
repeats
satellites
dot-plot
updated 4 months ago by
shelkmike
★ 1.2k • written 4 months ago by
kirillkirilenko
▴ 40
2
votes
1
reply
347
views
Shorten Illumina reads
RepeatExplorer2
Illumina
paired-end
updated 5 months ago by
Brian Bushnell
20k • written 5 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
584
views
Comment:
Comment: Estimate Genome Size
6 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
584
views
Comment:
Comment: Estimate Genome Size
6 months ago by
kirillkirilenko
▴ 40
0
votes
4
replies
584
views
Estimate Genome Size
jellyfish
genome
k-mer
6 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
710
views
Comment:
Comment: Detect STRs in illumina library
6 months ago by
kirillkirilenko
▴ 40
1
vote
4
replies
710
views
Detect STRs in illumina library
repeats
annotation
STR
6 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
710
views
Comment:
Comment: Detect STRs in illumina library
7 months ago by
kirillkirilenko
▴ 40
1
vote
0
replies
898
views
Comment:
Comment: Make a BedGraph file
11 months ago by
kirillkirilenko
▴ 40
3
votes
3
replies
898
views
Make a BedGraph file
BedGraph
RepeatMasker
BED
11 months ago by
kirillkirilenko
▴ 40
3
votes
2
replies
688
views
Choosing right statistical test in genomics
repeats
genomics
annotation
statistics
bed
updated 15 months ago by
Jean-Karim Heriche
27k • written 15 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
437
views
Metagenome analysis on EPI2ME ONT
metagenomics
ONT
16S
longreads
16 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: Show genome coverage in IGV-browser
17 months ago by
kirillkirilenko
▴ 40
1
vote
0
replies
1.1k
views
Comment:
Comment: Determine type of mutation
17 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: Determine type of mutation
17 months ago by
kirillkirilenko
▴ 40
4
votes
4
replies
1.1k
views
Determine type of mutation
hisat2
alignment
annotation
17 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: Show genome coverage in IGV-browser
18 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: Show genome coverage in IGV-browser
18 months ago by
kirillkirilenko
▴ 40
0
votes
5
replies
1.1k
views
Show genome coverage in IGV-browser
assembly
annotation
igv
17 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.2k
views
Comment:
Comment: Variant calling lost variant
18 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.2k
views
Comment:
Comment: Variant calling lost variant
18 months ago by
kirillkirilenko
▴ 40
2
votes
7
replies
1.2k
views
Variant calling lost variant
bcftools
samtools
variant-calling
alignment
updated 18 months ago by
jkbonfield
★ 1.2k • written 18 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.2k
views
Comment:
Comment: Variant calling lost variant
18 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
582
views
Find breakpoints using long reads
alignment
nanopore
samtools
19 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
629
views
Comment:
Comment: Construct a phylogenetic tree of apes
20 months ago by
kirillkirilenko
▴ 40
0
votes
3
replies
629
views
Construct a phylogenetic tree of apes
phylogenetics
msa
updated 20 months ago by
liorglic
★ 1.4k • written 20 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
528
views
Create library of TEs de novo
TEs
DNA
repetitive
annotation
updated 21 months ago by
lieven.sterck
15k • written 21 months ago by
kirillkirilenko
▴ 40
1
vote
1
reply
477
views
Convert mpileup file into dataframe
variant-calling
samtools
bcftools
updated 10 months ago by
Ram
43k • written 21 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.3k
views
Comment:
Comment: What are rnd families predicted by RepeatModeler?
21 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
421
views
Classify unknown TEs produced by RepeatModeler
repeats
TE
genome
21 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: Align short sequence against ONT reads
22 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: Align short sequence against ONT reads
22 months ago by
kirillkirilenko
▴ 40
1
vote
5
replies
1.1k
views
Align short sequence against ONT reads
long-reads
ONT
alignment
genome
updated 5 weeks ago by
Ram
43k • written 22 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.2k
views
Comment:
Comment: Error executing process > consensus_classification in NanoCLUST
23 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.3k
views
Comment:
Comment: Augustus output
2.0 years ago by
kirillkirilenko
▴ 40
0
votes
1
reply
1.3k
views
Comment:
Comment: Augustus output
2.0 years ago by
kirillkirilenko
▴ 40
3
votes
5
replies
1.3k
views
Augustus output
annotation
augustus
updated 2.0 years ago by
Juke34
8.6k • written 2.0 years ago by
kirillkirilenko
▴ 40
0
votes
1
reply
470
views
How to examine .hic files from Hi-C analysis?
Hi-C
3D-genome
updated 2.0 years ago by
GenoMax
142k • written 2.0 years ago by
kirillkirilenko
▴ 40
0
votes
0
replies
1.5k
views
Comment:
Comment: How to parse RepeatMasker output
2.1 years ago by
kirillkirilenko
▴ 40
1
vote
3
replies
1.5k
views
How to parse RepeatMasker output
bash
python
RepeatMasker
updated 2.0 years ago by
Michael
54k • written 2.1 years ago by
kirillkirilenko
▴ 40
3
votes
3
replies
2.0k
views
Perl modules for RepeatModeler
RepeatModeler
Perl
updated 2.1 years ago by
Michael
54k • written 2.1 years ago by
kirillkirilenko
▴ 40
2
votes
5
replies
3.6k
views
Demultiplexing nanopore reads
demultiplexing
ONT
barcodes
updated 20 months ago by
Prakki Rama
★ 2.7k • written 2.5 years ago by
kirillkirilenko
▴ 40
2
votes
3
replies
1.7k
views
Nanopore metagenomics analysis
ONT
metagenomics
microbiome
updated 2.6 years ago by
Chris Dean
▴ 410 • written 2.6 years ago by
kirillkirilenko
▴ 40
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