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questions
4
votes
10
replies
2.2k
views
6 follow
VEP tab/vcf - Different output
VEP
ensembl
updated 3 months ago by
Ram
43k • written 2.1 years ago by
Filago
▴ 100
0
votes
1
reply
795
views
CADD INDEL FILE
INDEL
CADD
updated 4 months ago by
sindy_roby
• 0 • written 2.8 years ago by
Filago
▴ 100
0
votes
1
reply
592
views
Loftee no splice site annotations
Loftee
VEP
updated 5 months ago by
AMARU
• 0 • written 2.2 years ago by
Filago
▴ 100
0
votes
0
replies
409
views
Training gkm-svm sequence length
dnaseseq
gkm-svm
deltasvm
14 months ago by
Filago
▴ 100
0
votes
1
reply
511
views
Filter VEP for same entry
VEP
updated 16 months ago by
barslmn
★ 2.1k • written 16 months ago by
Filago
▴ 100
0
votes
0
replies
334
views
When to remove releated samples in GATK
GATK
16 months ago by
Filago
▴ 100
0
votes
0
replies
687
views
MACS2 not working in paired end mode
NGS
bowtie2
macs2
peak
calling
18 months ago by
Filago
▴ 100
1
vote
2
replies
570
views
GATK 3.8 do not exclude annotations
GATK3
updated 19 months ago by
Ram
43k • written 19 months ago by
Filago
▴ 100
1
vote
3
replies
1.0k
views
Install GATK 3.8 with conda
GS
GATK
updated 19 months ago by
Ram
43k • written 19 months ago by
Filago
▴ 100
0
votes
0
replies
433
views
gnomAD RF filter
gnomAD
VCF
NGS
20 months ago by
Filago
▴ 100
2
votes
5
replies
1.2k
views
VEP v107 installation problem - CHECKSUMS
ENSEMBL
VEP
21 months ago by
Filago
▴ 100
0
votes
2
replies
535
views
Which tool for CRM enrichment?
CRM
TFBS
22 months ago by
Filago
▴ 100
0
votes
3
replies
692
views
VEP Could not get current species list - using predefined list instead
Ensembl
VEP
updated 24 months ago by
Ben_Ensembl
★ 2.4k • written 24 months ago by
Filago
▴ 100
0
votes
0
replies
339
views
DBD::mysql required for VEP installation?
VEP
Perl
24 months ago by
Filago
▴ 100
0
votes
0
replies
387
views
BCFTOOLS filter per sample per variant
VCF
bcftools
24 months ago by
Filago
▴ 100
0
votes
0
replies
382
views
VEP polypen humvar and humdiv
Polyphen
VEP
2.1 years ago by
Filago
▴ 100
2
votes
7
replies
2.8k
views
VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip
VEP
updated 2.2 years ago by
zx8754
11k • written 2.2 years ago by
Filago
▴ 100
0
votes
0
replies
338
views
Freebayes ABP
Freebayes
2.2 years ago by
Filago
▴ 100
1
vote
2
replies
2.0k
views
VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module installed
VCF
Ensembl
gnomAD
VEP
2.2 years ago by
Filago
▴ 100
1
vote
0
replies
562
views
Weighted random walk in R
Walk
Ranwom
R
Graph
2.8 years ago by
Filago
▴ 100
1
vote
3
replies
2.4k
views
Get REVEL plugin started with VEP
VCF
REVEL
VEP
updated 2.8 years ago by
2c98a9f9
• 0 • written 2.8 years ago by
Filago
▴ 100
0
votes
0
replies
620
views
COLOC.abf priors
COLOC
2.9 years ago by
Filago
▴ 100
4
votes
2
replies
669
views
Remote access- data security
Remote-Access
updated 2.9 years ago by
bernatgel
★ 3.4k • written 2.9 years ago by
Filago
▴ 100
0
votes
5
replies
2.2k
views
plink2 reorder alleles by fasta reference
PLINK2
updated 2.9 years ago by
chrchang523
10k • written 2.9 years ago by
Filago
▴ 100
0
votes
3
replies
1.4k
views
Corrupted dbsnp-vcf?
BCFTOOLS
VCF
Imputation
2.9 years ago by
Filago
▴ 100
6
votes
3
replies
5.5k
views
How to set up bcftools plugins?
BCFTOOLS
updated 2.9 years ago by
ATpoint
82k • written 2.9 years ago by
Filago
▴ 100
1
vote
0
replies
831
views
Colocalization window size
COLOC
eqtl
R
gwas
updated 2.9 years ago by
zx8754
11k • written 2.9 years ago by
Filago
▴ 100
0
votes
4
replies
1.1k
views
> 90% samples, DP > 10
VCF
R
DP
updated 2.9 years ago by
sbstevenlee
▴ 480 • written 2.9 years ago by
Filago
▴ 100
2
votes
1
reply
1.2k
views
Preparing data for kinship calculations
PRUNING
VCF
PLINK2
KING
updated 2.9 years ago by
Ram
43k • written 2.9 years ago by
Filago
▴ 100
1
vote
1
reply
621
views
Subset genomic intervals by other intervals
R
updated 3.0 years ago by
GenoMax
142k • written 3.0 years ago by
Filago
▴ 100
2
votes
4
replies
3.6k
views
bcftools multiple commands
bcftools
3.0 years ago by
Filago
▴ 100
2
votes
1
reply
1.2k
views
PLINK Clumping d-prime or r2?
GWAS
PLINK
updated 3.0 years ago by
Lemire
▴ 940 • written 3.0 years ago by
Filago
▴ 100
1
vote
5
replies
1.5k
views
EQTL FDR vs raw p-value
FUMA
EQTL
updated 3.0 years ago by
German.M.Demidov
★ 2.9k • written 3.0 years ago by
Filago
▴ 100
3
votes
1
reply
774
views
VEP Disk Space
VEP
Ensembl
updated 3.0 years ago by
Emily
23k • written 3.0 years ago by
Filago
▴ 100
0
votes
1
reply
1.0k
views
SCRAN-normalization
scRNA
Normalization
updated 3.0 years ago by
ATpoint
82k • written 3.0 years ago by
Filago
▴ 100
0
votes
0
replies
614
views
D Prime GWAS
Linkage
GWAS
3.1 years ago by
Filago
▴ 100
13
votes
3
replies
5.3k
views
TMM-Normalization
TMM
RNAseq-Normalization
2.5 years ago by
Filago
▴ 100
0
votes
1
reply
707
views
Normalization - Tissue specificity analysis
gtex
updated 3.1 years ago by
Istvan Albert
100k • written 3.1 years ago by
Filago
▴ 100
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