VEP polypen humvar and humdiv

Hello,

is it possible to retrieve the Polyphen "humdiv" and "humvar" scores both in a single VEP run?

Many thanks for your help!

polyphen vep

• 661 views • link

written 4.4 years ago by Filago •

0 answers

No answers yet.

More posts like this

VEP: Generation of polyphen2 & SFT scores for structural variants.
written 3.1 years ago by The_PyPanda •

Hello, has anybody generated polyphen 2 scores for structural variants reported by Manta using VEP. I have ran VEP but do not have any scores …
DBD::mysql required for VEP installation?
written 4.2 years ago by Filago •

Hello! Is DBD::mysql really required when working with VEP installation or am I fine without it, as long as I am just working offline? Many …
VEP plugin uses
written 5.0 years ago by SUMIT •

It is a small question, I downloaded all plugins and wrote in the input script to get plugin experimental functionalities (I am using merged cache …
Get REVEL plugin started with VEP
written 5.1 years ago by Filago •

Hello, I am using the VEP tool (version 104) and already managed to annotate a VCF-file (hg19) with basic annotations and CADD. Furthermore I wanted …
How to find genomic coordinates of the HumVar and HumDiv datasets
written 6.1 years ago by Eric Wang •

Hello all, I am looking for the list of genomic coordinates and variants for the HumVar and HumDiv datasets. Is there any way to obtain …
HumVar and HumDiv genomic coordinates
written 6.3 years ago by mathieu.quinodoz •

Hello all, I am looking for the list of genomic coordinates and variants for the HumVar and HumDiv datasets (like a vcf file). From the …
PolyPhen Humdiv vs HumVar discrepancies
written 7.5 years ago by cocchi.e89

Dear all, as far as I know Polyphen2 (http://genetics.bwh.harvard.edu/pph2/) predicts variant effect based on 2 different DB: - **HumDiv**: *Mendelian disease variants vs. divergence from …
VEP and Annovar Annotation
written 9.0 years ago by BAGeno

Hi, I am trying to figure out which tool VEP or Annovar, is most accurate in terms of SIFT and Polyphen annotation. I annotated my …
VEP vs webserver Polyphen scores
written 10.1 years ago by regrant •

Hello, I have recently noted a discrepancy the scores given by running PolyPhen at its [website][1] vs getting the PolyPhen score from ensembl's variant effect …
Polyphen-2 Classifier Model
written 14.2 years ago by learnerforever

On the polyphen-2 webpage <a href="http://genetics.bwh.harvard.edu/pph2/bgi.shtml">http://genetics.bwh.harvard.edu/pph2/bgi.shtml</a> There are two options for the classifier model: HumDiv HumVar Could anyone explain what these are? Is there a …