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990
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Comment: Comment: analysing bismark.cov.gz files
11 months ago by adR ▴ 120
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2
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990
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analysing bismark.cov.gz files
R methylation bismark
11 months ago by adR ▴ 120
1
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1
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590
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DESeq2. Multi-factor Interactions designs
RNA-Seq mikelove DESeq2
updated 19 months ago by ▴ 790 • written 19 months ago by ▴ 120
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0
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652
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Comment: Comment: node rewiring analysis using DyNet app in the Cytoscape
20 months ago by adR ▴ 120
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2
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652
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node rewiring analysis using DyNet app in the Cytoscape
Cytoscape DyNet
20 months ago by adR ▴ 120
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0
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308
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Detecting Rewiring Events in Protein-Protein Interaction
interaction DyNet network biology protein
20 months ago by adR ▴ 120
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0
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528
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Comment: Comment: Is ATAC-seq libraries consider as reduced representation libraries ?
2.1 years ago by adR ▴ 120
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2
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528
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Is ATAC-seq libraries consider as reduced representation libraries ?
ATAC-Seq Bismark
2.1 years ago by adR ▴ 120
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0
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603
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Comment: Comment: how to handle duplicate reads in unpaired Whole Exome Sequence
2.1 years ago by adR ▴ 120
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2
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603
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how to handle duplicate reads in unpaired Whole Exome Sequence
SAMtools PCR Picard
updated 11 months ago by 43k • written 2.1 years ago by ▴ 120
1
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0
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1.7k
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Comment: Comment: how to get legends labels for multiqc plots
2.1 years ago by adR ▴ 120
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1
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1.7k
views
Comment: Comment: how to get legends labels for multiqc plots
2.1 years ago by adR ▴ 120
6
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11
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1.7k
views
how to get legends labels for multiqc plots
multiQC
2.1 years ago by adR ▴ 120
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0
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1.7k
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Comment: Comment: how to get legends labels for multiqc plots
2.1 years ago by adR ▴ 120
0
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2
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1.7k
views
Comment: Comment: how to get legends labels for multiqc plots
2.1 years ago by adR ▴ 120
0
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0
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672
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Comment: Comment: whole exome sequence fragment size analysis
2.2 years ago by adR ▴ 120
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1
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672
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Comment: Comment: whole exome sequence fragment size analysis
2.2 years ago by adR ▴ 120
1
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4
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672
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whole exome sequence fragment size analysis
deepTools bamPEFragmentSize
2.2 years ago by adR ▴ 120
0
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1
reply
945
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Comment: Comment: human genome files
2.2 years ago by adR ▴ 120
2
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4
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945
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human genome files
alignment featureCounts
updated 2.2 years ago by 142k • written 2.2 years ago by ▴ 120
0
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1
reply
470
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pipeline for methylation data analysis
ATAC-seq methyl-ATAC-seq methylation DNA
updated 2.2 years ago by ▴ 250 • written 2.2 years ago by ▴ 120
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0
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320
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how to add more filter option on the gene ontology(GO) annotation
class gene ontology GO annotation
2.2 years ago by adR ▴ 120
2
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3
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1.8k
views
computeMatrix in deeptool is Running with no result
deepTools bamCoverage computeMatrix
updated 2.4 years ago by ▴ 30 • written 2.4 years ago by ▴ 120
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0
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1.8k
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Comment: Comment: computeMatrix in deeptool is Running with no result
2.4 years ago by adR ▴ 120
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1
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2.4k
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Comment: Comment: Deeptools: computeMatrix can't read file
2.4 years ago by adR ▴ 120
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1
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2.4k
views
Comment: Comment: Deeptools: computeMatrix can't read file
2.4 years ago by adR ▴ 120
2
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2
replies
853
views
multiBamSummary for unpaired end read?
multiBamSummary bamCoverage deepTools
updated 2.4 years ago by 142k • written 2.4 years ago by ▴ 120
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1
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4.4k
views
Comment: Comment: multiqc could not generate results
2.4 years ago by adR ▴ 120
3
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6
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4.4k
views
multiqc could not generate results
multiQC
updated 2.4 years ago by ★ 1.4k • written 2.4 years ago by ▴ 120
2
votes
3
replies
839
views
how to do basic statistics for bam files
picard GATK alignment
updated 2.5 years ago by 6.4k • written 2.5 years ago by ▴ 120
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1
reply
6.9k
views
Comment: Comment: how to install picard and GATK
2.5 years ago by adR ▴ 120
0
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1
reply
6.9k
views
Comment: Comment: how to install picard and GATK
2.5 years ago by adR ▴ 120
1
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5
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6.9k
views
how to install picard and GATK
picard GATK
updated 2.5 years ago by 161k • written 2.5 years ago by ▴ 120
1
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1
reply
798
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feutureCount in the subread
fe subread
2.5 years ago by adR ▴ 120
0
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1
reply
1.2k
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Comment: Comment: counting EXOM reads using subread featureCounts
2.5 years ago by adR ▴ 120
0
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1
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1.2k
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Comment: Comment: counting EXOM reads using subread featureCounts
2.5 years ago by adR ▴ 120
1
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6
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1.2k
views
counting EXOM reads using subread featureCounts
featureCounts subread exom
updated 23 months ago by 43k • written 2.5 years ago by ▴ 120
0
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1
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921
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Comment: Comment: alignment using bowtie2
2.5 years ago by adR ▴ 120
2
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3
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921
views
alignment using bowtie2
bowtie2 sequencing alignment
updated 2.5 years ago by 8.7k • written 2.5 years ago by ▴ 120
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1
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938
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Comment: Comment: Differentail expression analysis between 3 groups
2.5 years ago by adR ▴ 120
1
vote
3
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938
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Differentail expression analysis between 3 groups
RNA-Seq DESeq2 limma DEA
updated 2.5 years ago by ★ 2.0k • written 2.5 years ago by ▴ 120
0
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0
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353
views
Circulating Cell-Free DNA
Bioconductor R sequencing
2.6 years ago by adR ▴ 120
0
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0
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752
views
Comment: Comment: how to produce plot below using R
2.8 years ago by adR ▴ 120
0
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2
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752
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how to produce plot below using R
RNA-Seq plot circus
2.8 years ago by adR ▴ 120
0
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1
reply
451
views
gene calssfication based on on their chemical nature
RNA-Seq SingleCellSignalR
updated 2.9 years ago by ★ 1.6k • written 2.9 years ago by ▴ 120
0
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0
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432
views
circusplot:-adding additional layer or track to indicate additional futures
r
2.9 years ago by adR ▴ 120
0
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1
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592
views
Inter-tissue coexpression network analysis
correlation bipartite clustring coexpression
3.2 years ago by adR ▴ 120
2
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4
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3.3k
views
how to make correlation heatmap
heatmaps correlation
updated 3.2 years ago by ▴ 180 • written 3.2 years ago by ▴ 120
0
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0
replies
543
views
possiblity of using SingleCellSignalR for bulk RNAseq data
RNA-Seq SingleCellSignalR
3.2 years ago by adR ▴ 120
0
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1
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1.2k
views
Comment: C: MEgene correlated to triat and Gene signficance coorelated to triat
3.2 years ago by adR ▴ 120
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