possiblity of using SingleCellSignalR for bulk RNAseq data

Hello Dears,

I am wondering if I can apply SingleCellSignalR software for bulk RNAseq data in order to see ligand-receptor interactions between two tissues? My objective is to see if secretion coding genes from one tissue possibly interact with genes coding receptor proteins in the other tissue.

Thank you!

rna-seq singlecellsignalr

• 805 views • link

written 5.4 years ago by adR

0 answers

No answers yet.

More posts like this

Weird edgeR normalization results for one tissue
written 10 months ago by imetrev •

Hello, I have a question regarding edgeR normalization, I have a three tissue RNAseq dataset, with males and females sequenced for both sexes, After normalization …
circusplot:-adding additional layer or track to indicate additional futures
written 5.1 years ago by adR

Hello everyone, I would be grateful if someone can help me on how to add additional layer(track) on a circus plot below. The plot showing …
Inter-tissue coexpression network analysis
written 5.4 years ago by adR

Hi Dears, I have two tissue expression data collected from the same individuals. I want to study the interactions between these two issues as indicated …
correlation matrix and working on signficant genes
written 5.8 years ago by adR

Hi, I have gene expression data from two tissues of the same mouse model(Tissue A and Tissue B). I want to do a correlation test …
How to analyze RNAseq data
written 5.8 years ago by adR

Hello Dear Biostars, I have RNAseq data from four groups(A, B, C, and D). Each group represents patients with a particular disease (liver, kidney, heart, …
two-sample test with cut-off measurements
written 5.8 years ago by giuseppe0525 •

Hi all, I am digging into some statistical analysis with SingleCellSignalR, which is a tool to predict cellular interaction with single-cell RNA-seq data. I was …
correlation of genes from two data sets
written 5.8 years ago by adR

Hi I have gene expression data from two different tissues of the same mice/organism. Let say tissue A and tissue B. The number and type …
How I can study cross-talk from two different tissue using gene expression profile
written 5.9 years ago by adR

Hi every one, I am wondering if anyone knows how to find cross-tissue communication signaling using gene expression data set. I have a gene expression …
Signal pathway impact analysis
written 5.9 years ago by adR

Hello Dears, I am just wondering if there is a way to apply a Bioconductor package SPIA for KEGG metabolic pathway. I found it interesting …
Protein-protein docking analysis
written 6.2 years ago by mahafujulislamtonmoy •

Hello, I have two protein A and B. I want to see an interaction between this two protein using protein-protein docking in HADDOCK 2.4. After …