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0
votes
2
replies
273
views
What do the transcript variant # mean in RefSeq?
refseq
updated 9 days ago by 44k • written 9 days ago by ▴ 750
0
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0
replies
251
views
Comment: Comment: How to convert Haps file to vcf file?
22 days ago by curious ▴ 750
0
votes
5
replies
445
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 29 days ago by 10k • written 29 days ago by ▴ 750
0
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0
replies
445
views
Comment: Comment: Easy way to find out which allele is minor allele from bed file?
29 days ago by curious ▴ 750
0
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1
reply
445
views
Comment: Comment: Easy way to find out which allele is minor allele from bed file?
29 days ago by curious ▴ 750
0
votes
0
replies
253
views
Comment: Comment: Can't figure out plink --sample-diff
7 weeks ago by curious ▴ 750
0
votes
2
replies
253
views
Can't figure out plink --sample-diff
plink
7 weeks ago by curious ▴ 750
0
votes
0
replies
414
views
Comment: Comment: Why do these two variants appear to result in the same amino acid change when an
4 months ago by curious ▴ 750
3
votes
2
replies
414
views
Why do these two variants appear to result in the same amino acid change when annotated by snpeff, but are annotated differently in clinvar
clinvar
4 months ago by curious ▴ 750
1
vote
1
reply
311
views
Is there a way to map Medgen # to OMIM # programmatically?
medgen omim
updated 4 months ago by 162k • written 4 months ago by ▴ 750
0
votes
1
reply
450
views
Where do these snpeff annotation come from?
snpeff
updated 6 months ago by 100k • written 6 months ago by ▴ 750
0
votes
4
replies
1.2k
views
Is there a way to get a list of all homogygous sites for each sample with plink (regardless if they are in a run)
plink
updated 8 months ago by 10k • written 8 months ago by ▴ 750
0
votes
1
reply
1.2k
views
Comment: Comment: Is there a way to get a list of all homogygous sites for each sample with plink
8 months ago by curious ▴ 750
1
vote
1
reply
456
views
bcftools update ID keeping only string after ';'
bcftools
updated 9 months ago by 162k • written 9 months ago by ▴ 750
0
votes
1
reply
672
views
Comment: Comment: Is this a valid allele in a vcf?
10 months ago by curious ▴ 750
0
votes
1
reply
672
views
Comment: Comment: Is this a valid allele in a vcf?
10 months ago by curious ▴ 750
0
votes
5
replies
672
views
Is this a valid allele in a vcf?
vcf
updated 10 months ago by 44k • written 10 months ago by ▴ 750
0
votes
1
reply
695
views
Comment: Comment: Is it possible to interpret HGVS without transcript version number?
10 months ago by curious ▴ 750
0
votes
1
reply
695
views
Comment: Comment: Is it possible to interpret HGVS without transcript version number?
10 months ago by curious ▴ 750
0
votes
0
replies
413
views
Comment: Comment: jannovar download problem
10 months ago by curious ▴ 750
0
votes
6
replies
695
views
Is it possible to interpret HGVS without transcript version number?
hgvs
updated 10 months ago by ★ 1.2k • written 10 months ago by ▴ 750
0
votes
2
replies
413
views
jannovar download problem
jannovar
10 months ago by curious ▴ 750
0
votes
0
replies
544
views
Comment: Comment: Why does this stop gained result in a longer protein than the canonical version
11 months ago by curious ▴ 750
2
votes
2
replies
544
views
Why does this stop gained result in a longer protein than the canonical version
ensembl
updated 11 months ago by 44k • written 11 months ago by ▴ 750
2
votes
2
replies
1.6k
views
Download VCF for dbsnp 156?
dbsnp
updated 11 months ago by 142k • written 11 months ago by ▴ 750
0
votes
1
reply
466
views
Any way to get bcftools to query up to but not including the last site given in a region query
bcftools
updated 11 months ago by 162k • written 11 months ago by ▴ 750
4
votes
3
replies
1.1k
views
What does canonical transcript mean in the context of VEP
vep
updated 12 months ago by 4.2k • written 12 months ago by ▴ 750
0
votes
0
replies
505
views
Comment: Comment: How to check the imputation quality of genotyping files?
13 months ago by curious ▴ 750
0
votes
0
replies
823
views
Comment: Comment: Low SNP Overlap with Michigan 1KG and TopMed reference panel
13 months ago by curious ▴ 750
0
votes
0
replies
723
views
Comment: Comment: viewing hgvs in genome data viewer
13 months ago by curious ▴ 750
0
votes
1
reply
723
views
Comment: Comment: viewing hgvs in genome data viewer
13 months ago by curious ▴ 750
1
vote
4
replies
723
views
viewing hgvs in genome data viewer
ncbi hgvs clinvar
13 months ago by curious ▴ 750
0
votes
0
replies
317
views
Trying to understand the difference between between these two HGVS
hgvs
16 months ago by curious ▴ 750
2
votes
2
replies
798
views
drop duplicate insertion deletions in VCF at same position while keeping one
bcftools
16 months ago by curious ▴ 750
0
votes
0
replies
798
views
Comment: Comment: drop duplicate insertion deletions in VCF at same position while keeping one
16 months ago by curious ▴ 750
2
votes
1
reply
901
views
In GWAS what is the point of regressing a quantitative phenotype on covariates first and taking the residuals?
gwas
updated 16 months ago by 3.9k • written 16 months ago by ▴ 750
1
vote
1
reply
511
views
calculating the allele frequency of a gene deletion and duplication
cnv
updated 16 months ago by ★ 2.9k • written 16 months ago by ▴ 750
5
votes
11
replies
2.3k
views
fast way to get last position in a large indexed VCF?
bcftools
updated 20 months ago by 100k • written 21 months ago by ▴ 750
0
votes
1
reply
2.3k
views
Comment: Comment: fast way to get last position in a large indexed VCF?
20 months ago by curious ▴ 750
0
votes
1
reply
2.3k
views
Comment: Comment: fast way to get last position in a large indexed VCF?
20 months ago by curious ▴ 750
0
votes
0
replies
834
views
Comment: Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
21 months ago by curious ▴ 750
0
votes
0
replies
834
views
Comment: Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
21 months ago by curious ▴ 750
0
votes
3
replies
834
views
is it possible to calculate MAF from DS instead of GT when using bcftools +fill-tags?
bcftools
21 months ago by curious ▴ 750
1
vote
0
replies
430
views
Does genomic control have a valid interpretation when there are no genome-wide significant hits
genomic control statistics
22 months ago by curious ▴ 750
0
votes
0
replies
400
views
am I understanding scaled CADD scores correct?
cadd
2.0 years ago by curious ▴ 750
2
votes
1
reply
511
views
Using snpsift to filter VCF by sample
snpsift
updated 2.1 years ago by 162k • written 2.1 years ago by ▴ 750
0
votes
0
replies
398
views
Does larger standardized PRS value always means higher risk?
prs
2.2 years ago by curious ▴ 750
0
votes
0
replies
1.3k
views
Comment: Comment: grep a vcf
2.2 years ago by curious ▴ 750
0
votes
0
replies
577
views
Converting observed heritability to liability scale, how to get standard error?
hertiability greml ldsc
2.3 years ago by curious ▴ 750
0
votes
0
replies
1.1k
views
Comment: Comment: keep samples that carry non-reference allele in list of variants snpeff/snpsift
2.3 years ago by curious ▴ 750
300 results • Page 1 of 6
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