bcftools update ID keeping only string after ';'
I have values in ID column of VCF that are like this:
"stringidontwant;stringiwant"
is there some high level way to keep stringiwant but get rid of stringidontwant,
like bcftools annotate --set-id + some command to alter %ID
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Pierre Lindenbaum
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curious
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curious
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sed 's/^\([^\t]*\t[^\t]*\)\tstringidontwant\t/\1\tstringiwant\t/' in.vcf
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