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Showing :
questions
4
votes
5
replies
3.4k
views
WGCNA TOM calculation time
RNA-Seq
R
WGCNA
15 months ago by
tothepoint
▴ 800
0
votes
1
reply
537
views
scRNA cluster mapping comparision derived from two different analysis
scRNA
seurat
updated 19 months ago by
igor
13k • written 19 months ago by
tothepoint
▴ 800
0
votes
1
reply
1.1k
views
Positive selection population identification using xpehh
R
rehh
selective sweep
population genetics
xpehh
updated 2.8 years ago by
GenoMax
142k • written 3.8 years ago by
tothepoint
▴ 800
0
votes
2
replies
1.1k
views
Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosity (hp) analysis from vcf file
selection
wgs
vcf
gatk
updated 2.6 years ago by
kk.mahsa
▴ 140 • written 2.9 years ago by
tothepoint
▴ 800
0
votes
1
reply
799
views
SNPs id conversion from one database to another
SNP
genome
assembly
Genotyping
3.2 years ago by
tothepoint
▴ 800
5
votes
1
reply
1.0k
views
Methylation data analysis
RNA-Seq
wgbs
gene
CpG
updated 3.3 years ago by
Elucidata
▴ 270 • written 3.4 years ago by
tothepoint
▴ 800
1
vote
1
reply
939
views
Bismark methylation extract result interpretation
WGBS
bismark
methylation
CpG
updated 3.5 years ago by
Ventrilocus
▴ 180 • written 3.5 years ago by
tothepoint
▴ 800
0
votes
5
replies
665
views
Missing chromosomal Information after sorting and deduplication step
next-gen
assembly
sequence
methylation
3.5 years ago by
tothepoint
▴ 800
4
votes
1
reply
1.6k
views
RepeatMasker data download
RepeatMasker
ucsc
assembly
updated 3.6 years ago by
Biostar
20 • written 4.2 years ago by
tothepoint
▴ 800
3
votes
6
replies
1.2k
views
How to plot figure?
Fst
vcf
wgs
plot
3.1 years ago by
tothepoint
▴ 800
4
votes
8
replies
3.6k
views
Combining VCF files using GATK
WGS
VCF
GWAS
updated 3.7 years ago by
niyomiw88
• 0 • written 4.1 years ago by
tothepoint
▴ 800
1
vote
1
reply
1.0k
views
Geneid between regions of chromosome
biomaRt
VEP
Ensembl
geneid
updated 3.8 years ago by
Ben_Ensembl
★ 2.4k • written 3.8 years ago by
tothepoint
▴ 800
9
votes
8
replies
3.3k
views
Convert Logp value to P value
snp
csv
R
updated 19 months ago by
Ram
43k • written 3.9 years ago by
tothepoint
▴ 800
3
votes
2
replies
5.8k
views
Modify chromosome name in fasta file
fasta
chromosome
genome
name
updated 3.9 years ago by
Biostar
20 • written 4.1 years ago by
tothepoint
▴ 800
0
votes
0
replies
526
views
How can I identify gene related to locus of certain chromosome.
vcf
gene
locus
wgs
selective sweep
4.0 years ago by
tothepoint
▴ 800
3
votes
2
replies
2.0k
views
VCF file ID missing
SNP
assembly
VCF
WGS
4.0 years ago by
tothepoint
▴ 800
0
votes
0
replies
637
views
Integration of data from different platform to perform population genetics analysis
RNA-Seq
Assembly
genome
gwas
population genetics
updated 4.0 years ago by
Biostar
20 • written 4.2 years ago by
tothepoint
▴ 800
1
vote
2
replies
2.9k
views
Rename Chromosome position/Notation in VCF file
Assembly
SNP
vcf
next-gen
genome
updated 4.1 years ago by
bari.ballew
▴ 460 • written 4.1 years ago by
tothepoint
▴ 800
1
vote
6
replies
911
views
Assembly quality analysis
assembly
denovo
genome
4.1 years ago by
tothepoint
▴ 800
3
votes
13
replies
3.9k
views
KentUtils installation issue
UCSC
KentUtils
Installation
linux
lastz
updated 4.1 years ago by
Luis Nassar
▴ 650 • written 4.1 years ago by
tothepoint
▴ 800
4
votes
5
replies
1.1k
views
RNASeq data analysis without control
RNA-Seq
deg
transcriptome
4.2 years ago by
tothepoint
▴ 800
4
votes
5
replies
3.2k
views
PCA plot color differentiation
PCA
gwas
color
plink
4.2 years ago by
tothepoint
▴ 800
1
vote
2
replies
626
views
Merge VCF file
vcf
gatk
gwas
pca
updated 4.3 years ago by
Pierre Lindenbaum
161k • written 4.3 years ago by
tothepoint
▴ 800
1
vote
1
reply
4.0k
views
Rename sample id in vcf header
vcf
bcftools
4.3 years ago by
tothepoint
▴ 800
0
votes
3
replies
1.7k
views
merging vcf files with sample information
vcf
gwas
4.3 years ago by
tothepoint
▴ 800
0
votes
4
replies
1.6k
views
Plink Error in PCA plot
Plink
pca
vcf
gwas
4.3 years ago by
tothepoint
▴ 800
2
votes
4
replies
1.9k
views
Chromosome position in VCF file
vcf
wgs
population genetics
plink
4.3 years ago by
tothepoint
▴ 800
0
votes
1
reply
814
views
RepeatModeler is showing no progress
RepeatModeler
Masking
rmblast
updated 3.1 years ago by
Shri hari
▴ 40 • written 4.4 years ago by
tothepoint
▴ 800
0
votes
0
replies
769
views
Hi-c Phase block Viewer
Hi-C
10x
phase block
SNP
Haploview
4.4 years ago by
tothepoint
▴ 800
0
votes
1
reply
1.9k
views
Circos Plot for synteny file
circos
synteny
genome
Assembly
updated 4.4 years ago by
Vitis
★ 2.5k • written 4.4 years ago by
tothepoint
▴ 800
0
votes
0
replies
688
views
Hapblock from snp file
SNP
haplotype
haplogroup
phasing
vcf
4.4 years ago by
tothepoint
▴ 800
0
votes
2
replies
1.9k
views
Circos Plot for synteny relationship
genome
circos
Assembly
synteny_plot
4.4 years ago by
tothepoint
▴ 800
0
votes
0
replies
919
views
Circos Karyotype file preparation
circos
fasta
genome
chromosome
karyotype
4.5 years ago by
tothepoint
▴ 800
6
votes
1
reply
1.3k
views
Assembly quality check
pacbio
Assembly
polishing
canu
updated 4.5 years ago by
hafiz.talhamalik
▴ 350 • written 4.5 years ago by
tothepoint
▴ 800
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