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312
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Finding a list of heritable traits using GCTA
complex heritability traits GCTA
22 months ago by samuelandjw ▴ 250
2
votes
1
reply
540
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Should we include genotype as covariates when performing EWAS?
methylation EWAS DNA
updated 16 months ago by 43k • written 23 months ago by ▴ 250
2
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1
reply
488
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What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation EWAS DNA
updated 16 months ago by 43k • written 23 months ago by ▴ 250
4
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1
reply
459
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Is it okay to map reads from WES designed for GRCh37 to GRCh38?
exome whole sequencing
updated 23 months ago by 161k • written 23 months ago by ▴ 250
0
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0
replies
410
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How to get list of blood-expressed Fantom 5 enhancers?
fantom5
updated 23 months ago by 43k • written 23 months ago by ▴ 250
0
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1
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748
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Comment: Comment: How to access the NCBI Molecular QTL Browser?
24 months ago by samuelandjw ▴ 250
1
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3
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748
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How to access the NCBI Molecular QTL Browser?
QTL
updated 24 months ago by 141k • written 24 months ago by ▴ 250
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0
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7.8k
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Comment: Comment: Any FastQC alternative
2.0 years ago by samuelandjw ▴ 250
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0
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290
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How to group EWAS traits like GWAS catalog does?
GWAS EWAS
2.0 years ago by samuelandjw ▴ 250
3
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1
reply
608
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reference request: list of DNA methylation sites with consistent methylation levels across individuals in blood
methylation DNA
updated 2.2 years ago by ★ 2.9k • written 2.2 years ago by ▴ 250
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0
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978
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Answer: Answer: Unable to install dplyr on Fedora 35
2.2 years ago by samuelandjw ▴ 250
1
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1
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536
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EWAS: should DNA methylation level be the independent variable or dependent variable?
DNA EWAS methylation
updated 20 months ago by • 0 • written 2.3 years ago by ▴ 250
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0
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1.5k
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Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.5 years ago by samuelandjw ▴ 250
1
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1
reply
577
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Should we trust genotypes called in simple tandem repeat regions?
sequencing GATK WGS WES
updated 2.5 years ago by 100k • written 2.5 years ago by ▴ 250
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0
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677
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Comment: Comment: What is the largest freely available dataset of WGS samples?
2.5 years ago by samuelandjw ▴ 250
3
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0
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514
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GATK site filtering: when should I use VQSR or hard filtering?
VQSR GATK
2.5 years ago by samuelandjw ▴ 250
1
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0
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1.6k
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Answer: Answer: How to subset vcf by sample and write?
2.7 years ago by samuelandjw ▴ 250
1
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0
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705
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Comment: Comment: GATK VQSR for human WGS
2.7 years ago by samuelandjw ▴ 250
0
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0
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2.2k
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Comment: Comment: Error in plot-vcfstats
2.7 years ago by samuelandjw ▴ 250
2
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0
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1.4k
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Comment: Comment: Using vcftools and got Error: Unknown option: --max-missing
2.7 years ago by samuelandjw ▴ 250
0
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1
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6.0k
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Comment: Comment: plot-vcfstats
2.7 years ago by samuelandjw ▴ 250
2
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1
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6.0k
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Answer: Answer: plot-vcfstats
2.7 years ago by samuelandjw ▴ 250
0
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0
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1.5k
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Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.7 years ago by samuelandjw ▴ 250
0
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4
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1.5k
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Best practice for running GATK VQSR on X chromosome
WGS GATK WES
2.5 years ago by samuelandjw ▴ 250
0
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1
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2.5k
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Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.7 years ago by samuelandjw ▴ 250
1
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0
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2.5k
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Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.8 years ago by samuelandjw ▴ 250
11
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13
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2.5k
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Why is WGS/WES depth of Y chromosome highly variable?
chromosome-Y whole-genome-sequencing
updated 16 months ago by 43k • written 2.8 years ago by ▴ 250
0
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1
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2.5k
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Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.8 years ago by samuelandjw ▴ 250
0
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0
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6.4k
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Comment: Comment: GATK genomicsDBimport intervals for WGS
2.8 years ago by samuelandjw ▴ 250
1
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0
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2.8k
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Comment: Comment: Why is VCFtools excluding invariable sites?
3.0 years ago by samuelandjw ▴ 250
0
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0
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6.1k
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Comment: Comment: plotting PCA PLINK eigenvec output in R
3.0 years ago by samuelandjw ▴ 250
2
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1
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6.1k
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Answer: Answer: plotting PCA PLINK eigenvec output in R
3.0 years ago by samuelandjw ▴ 250
0
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0
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641
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Convert spanning deletions called by GATK back to regular indels
GATK sequencing
3.5 years ago by samuelandjw ▴ 250
0
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0
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2.0k
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Answer: A: How do I plot RFMix results?
3.6 years ago by samuelandjw ▴ 250
0
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0
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8.8k
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Comment: C: bwa mem hard clipping
4.4 years ago by samuelandjw ▴ 250
0
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0
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23k
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Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
4.4 years ago by samuelandjw ▴ 250
0
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0
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1.7k
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Comment: C: meaning of Q_bias ADMIXTURE bootstrap
4.7 years ago by samuelandjw ▴ 250
1
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2
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1.7k
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meaning of Q_bias ADMIXTURE bootstrap
admixture population ancestry
updated 4.7 years ago by • 0 • written 5.2 years ago by ▴ 250
0
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1
reply
1.0k
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refine population phased haplotypes by pedigree
phasing genotype pedigree population
updated 4.8 years ago by • 0 • written 5.2 years ago by ▴ 250
4
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0
replies
1.8k
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Answer: A: ADMIXTURE haploid mode does not converge
5.1 years ago by samuelandjw ▴ 250
4
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1
reply
1.8k
views
ADMIXTURE haploid mode does not converge
admixture population
updated 16 months ago by 43k • written 5.2 years ago by ▴ 250
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