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493
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Get Cluster PF % and Cluster Density from Interop module using python
Interop python
4 months ago by kspata ▴ 80
0
votes
0
replies
493
views
Answer: Answer: Get Cluster PF % and Cluster Density from Interop module using python
4 months ago by kspata ▴ 80
0
votes
0
replies
658
views
bed2vcf (bedr) package error
R vcf bedr bed
updated 2.6 years ago by 161k • written 2.6 years ago by ▴ 80
0
votes
1
reply
527
views
Convert coordinates from one cotton genome to another
Genome over cotton lift
updated 2.6 years ago by 15k • written 2.6 years ago by ▴ 80
1
vote
3
replies
1.2k
views
differences between Illumina Platinum Variant Calls and NIST variant calls
SNP vcf
updated 2.6 years ago by • 0 • written 4.8 years ago by ▴ 80
3
votes
7
replies
1.5k
views
7 follow
Annotation of non model fish (mahi mahi) genome
Assembly Annotation
updated 3.1 years ago by 8.5k • written 3.8 years ago by ▴ 80
0
votes
0
replies
520
views
Total number of trimmed reads less than number of mapped reads
alignment next-gen sequence SAMtools BWA
3.1 years ago by kspata ▴ 80
0
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1
reply
1.0k
views
Comment: C: Extract unique barcodes and find their frequency
3.5 years ago by kspata ▴ 80
0
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3
replies
1.0k
views
Extract unique barcodes and find their frequency
ngs illumina mapping
3.5 years ago by kspata ▴ 80
0
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0
replies
746
views
Comment: C: Read showing Insertion of 41 bases when aligned with BWA
3.8 years ago by kspata ▴ 80
0
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2
replies
746
views
Comment: C: Read showing Insertion of 41 bases when aligned with BWA
3.8 years ago by kspata ▴ 80
0
votes
5
replies
746
views
Read showing Insertion of 41 bases when aligned with BWA
Variant BWA Bowtie2
updated 3.8 years ago by 14k • written 3.8 years ago by ▴ 80
0
votes
0
replies
710
views
Detect Transgene Insertion Site using SAM format
Transgene Insertion Site BWA SAM tools
4.2 years ago by kspata ▴ 80
0
votes
0
replies
694
views
Comparative analysis of experimental and control data from BS seq run
BS seq CpG Annoattion Bismark
4.3 years ago by kspata ▴ 80
0
votes
0
replies
986
views
Calculate LOH score for tumor only sample using GenomeStudio
GenomeStudio Infinium Assay Genotyping LOH score
4.4 years ago by kspata ▴ 80
0
votes
10
replies
11k
views
sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
perl bash bwa
updated 4.6 years ago by 21k • written 4.6 years ago by ▴ 80
0
votes
1
reply
11k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
4.6 years ago by kspata ▴ 80
0
votes
1
reply
11k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
4.6 years ago by kspata ▴ 80
0
votes
1
reply
11k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
4.6 years ago by kspata ▴ 80
0
votes
1
reply
11k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
4.6 years ago by kspata ▴ 80
0
votes
0
replies
1.2k
views
Comment: C: differences between Illumina Platinum Variant Calls and NIST variant calls
4.8 years ago by kspata ▴ 80
0
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0
replies
1.4k
views
Comment: C: Validation of SNP and INDEL calling pipeline
4.9 years ago by kspata ▴ 80
0
votes
2
replies
1.4k
views
Validation of SNP and INDEL calling pipeline
genome alignment SNP INDEL
updated 4.9 years ago by 47k • written 4.9 years ago by ▴ 80
1
vote
3
replies
1.7k
views
Find the genomic position of CTCF binding site on DMPK gene
gene genome UCSC Genome Browser
updated 4.9 years ago by 20 • written 5.9 years ago by ▴ 80
1
vote
0
replies
1.0k
views
Variant discrepancy between technical replicates
freebayes alignment
updated 5.0 years ago by 12k • written 5.0 years ago by ▴ 80
0
votes
0
replies
886
views
Error running samjdk.jar for extracting reads containing indels
alignment jvarkit samjdk indels
5.1 years ago by kspata ▴ 80
0
votes
0
replies
2.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
5.1 years ago by kspata ▴ 80
0
votes
0
replies
2.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
5.1 years ago by kspata ▴ 80
7
votes
10
replies
2.7k
views
Effect of trimming on alignment and fastqc report.
alignment next gen Fastqc trim galore
updated 5.1 years ago by 8.9k • written 5.1 years ago by ▴ 80
0
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0
replies
2.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
5.1 years ago by kspata ▴ 80
0
votes
1
reply
2.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
5.1 years ago by kspata ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: Partially map reads to a reference genome
5.1 years ago by kspata ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: Partially map reads to a reference genome
5.1 years ago by kspata ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: Partially map reads to a reference genome
5.1 years ago by kspata ▴ 80
0
votes
7
replies
1.1k
views
Partially map reads to a reference genome
alignment sequencing binning
5.1 years ago by kspata ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: Obtain sequence of a gene with vector DNA integrated
5.1 years ago by kspata ▴ 80
0
votes
2
replies
1.3k
views
Comment: C: Obtain sequence of a gene with vector DNA integrated
5.1 years ago by kspata ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: Obtain sequence of a gene with vector DNA integrated
5.1 years ago by kspata ▴ 80
2
votes
7
replies
1.3k
views
Obtain sequence of a gene with vector DNA integrated
assembly gene next-gen alignment
updated 5.1 years ago by ★ 2.5k • written 5.1 years ago by ▴ 80
0
votes
2
replies
1.2k
views
Coverage Discrepancy for samtools mpileup
sequencing alignment Plasmid
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 80
0
votes
3
replies
1.4k
views
Comment: C: Identification and taxonomic classification of Nematode
5.2 years ago by kspata ▴ 80
0
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1
reply
1.4k
views
Comment: C: Identification and taxonomic classification of Nematode
5.2 years ago by kspata ▴ 80
0
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1
reply
1.4k
views
Comment: C: Identification and taxonomic classification of Nematode
5.2 years ago by kspata ▴ 80
0
votes
10
replies
1.4k
views
Identification and taxonomic classification of Nematode
next-gen PCR products Nematode 18S
5.2 years ago by kspata ▴ 80
1
vote
1
reply
1.3k
views
Low % Phred Q30 for one of the lanes in HiSeq 4000 SE50 run
sequencing ChIP-Seq Barcode
updated 5.2 years ago by 141k • written 5.2 years ago by ▴ 80
0
votes
0
replies
1.6k
views
Comment: C: Set minimum variant frequency while calling variants with samtools
5.2 years ago by kspata ▴ 80
0
votes
2
replies
1.6k
views
Set minimum variant frequency while calling variants with samtools
samtools resequencing alignment variant frequency
updated 5.2 years ago by 100k • written 5.2 years ago by ▴ 80
1
vote
1
reply
2.4k
views
Remove low quality base calls from reads
Trimming Trim_Galore Alignment Variant Calls
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 80
0
votes
0
replies
1.2k
views
Comment: C: Coverage Discrepancy for samtools mpileup
5.3 years ago by kspata ▴ 80
3
votes
2
replies
1.2k
views
Audit trail for Bioinformatics software tools
next-gen align samtools alignment
updated 5.3 years ago by 20 • written 5.3 years ago by ▴ 80
105 results • Page 1 of 3
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